Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1089 ATGGAAGAACGGTATGATATTATCAAAGATATTGGGTCTGGCAACTATGGCGTTGCAAAGCTTGTTAAGGACAAACGCAGCGGTGCTCTCTATGCTGTTAAGTTCATTCACAGAGGCCATAAGATTGATGAGCATGTGCAAAGAGAGATTATAAATCATAGGTCCTTAAAACATCCCAATATCATTAGATTTAAGGAGGTATTGTGTACTCCAACTCATCTAGCCATAGTGATGGAATATGCCGCCGGGGGAGAACTATTTGAAAGAATATGCAATGCTGGAAGATTCAGTGAGGACGAGGCGAGATATTTCTTCCAGCAATTGATTTCAGGAGTTAGCTATTGCCATTCAATGGAAATATGCCATAGGGATCTTAAGCTGGAAAACACACTTTTAGATGAGGGTTCAGCACCACGACTTAAAATATGCGACTTTGGTTACTCAAAGTCATCGGTTTTGCACTCGCAACCTAAATCTACGGTGGGAACGCCAGCTTATATTGCACCGGAAGTATTATCAAGAAGAGAATACGATGGAAAGGTTGCTGATGTTTGGTCCTGCGGAGTAACCTTATATGTGATGCTAGTGGGAGGTTATCCTTTTGAAGATTCGGATGATCCACGAAACTTCAAAGAAACTCTTAAGAGAATTCTCAATGCCCACTATTTTATTCCAAACTATGTTCGTGTCTCAAAGGATTGTGGACACCTTCTATCTCAAATATTTGTAGCAAACCCAGAAAAGAGAATAACCATACCTGAAGTTAAAATGCACCCGTGGTACCTAAATAACTTGCCAGAGGAATTGATGGACCAAAGGGGATGCGAGTTGCAAAATATTGGTGTGGATGATGATGATGATTCATCATGTCAAAGCATTGAGTCAATACTTTCAATAATTCAAGAGGCTAGAAATTTAGGAGTGGGAAAAAAACTCAGTGGACAATTTGTTGCGGGTGACATTGATCTTGATGACATGGATGCTGAAATTGATGATATTGAAAATGGTGGCGATGATTTTGTATGTGCATTGTGA 1035 0.399 MEERYDIIKDIGSGNYGVAKLVKDKRSGALYAVKFIHRGHKIDEHVQREIINHRSLKHPNIIRFKEVLCTPTHLAIVMEYAAGGELFERICNAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDEGSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKVADVWSCGVTLYVMLVGGYPFEDSDDPRNFKETLKRILNAHYFIPNYVRVSKDCGHLLSQIFVANPEKRITIPEVKMHPWYLNNLPEELMDQRGCELQNIGVDDDDDSSCQSIESILSIIQEARNLGVGKKLSGQFVAGDIDLDDMDAEIDDIENGGDDFVCAL* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1089 344 SUPERFAMILY Protein kinase-like (PK-like) 3 275 IPR011009 -
Amo20g1089 344 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
Amo20g1089 344 Pfam Protein kinase domain 5 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1089 344 PANTHER SERINE/THREONINE KINASE 3 334 - -
Amo20g1089 344 ProSiteProfiles Protein kinase domain profile. 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1089 344 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Amo20g1089 344 Gene3D Transferase(Phosphotransferase) domain 1 81 268 - -
Amo20g1089 344 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Amo20g1089 344 SMART serkin_6 5 261 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g1089 344 PANTHER SERINE/THREONINE-PROTEIN KINASE SAPK1 3 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1089 Amo-Chr20 20063681 20081897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1089 4 286 CBL-interacting serine-threonine protein kinases AT4G24400 40.411 9.01e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Amo20g1089 Pkinase 5.8e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1089 K14498 - gmx:100807981 542.732