Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1080 ATGAAGAGAACTGGAAGCTCATCAGATTCTTTAGGAGCTCTCATGACAATTTGTCCATCATCAACAGAGGAGCAGAGTCCGAGGAGCAACCACGTGTACGGGCATGATCCATTGTTCCAGTCGATGGTGCTTGATGGTCTAGACGAAGAAGGGTGCACGGTAGAGGAATCTGGGCACCACTCTGAGAAGAAGCGAAGACTTAGCGTGGAACAAGTGAAAGCGTTGGAGAAGAACTTCGAGGTTGAGAACAAGCTTGAACCAGAGAGGAAGGTGAAGTTAGCACAAGAACTTGGGTTGCAGCCTAGACAGGTGGCGGTTTGGTTCCAGAACCGCCGCGCCAGGTGGAAGACTAAACAGCTTGAGAGAGATTATGGCGTTCTTAAAAATAATTATGATGCTCTTAAAGTTAATCATGATGCACTAAAACAGGACAACGATGCGTTGCACAAGCAGATTAAGGAATTGAAGACAAGGCTCCAAGAAGAGAACACAGCAAGCGATGTTTCCGTGAAGGAAGAACAGATAACGATGCCAGAATCAGAAGAGAAATTATTGGTGATGAATGAAGAACACAACACTACTACTCCTGATGAAACCTCAATTCTTGGATCAGGATCCAACGTTAACGATCATCACTTGTACCATGACAATTGCTTCAACGACAACAGCGACCACGTGTTGTTGCTCTTGGTGCAACAACAACACGCCGTCGCCATCACCGTCGTCGCCGCCACTCTTCCCTTCAGACTTCAACAAAGACGGTTCTTCCGATAG 774 0.4664 MKRTGSSSDSLGALMTICPSSTEEQSPRSNHVYGHDPLFQSMVLDGLDEEGCTVEESGHHSEKKRRLSVEQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKNNYDALKVNHDALKQDNDALHKQIKELKTRLQEENTASDVSVKEEQITMPESEEKLLVMNEEHNTTTPDETSILGSGSNVNDHHLYHDNCFNDNSDHVLLLLVQQQHAVAITVVAATLPFRLQQRRFFR* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1080 257 Gene3D - 57 125 - -
Amo20g1080 257 Coils Coil 117 165 - -
Amo20g1080 257 Pfam Homeobox associated leucine zipper 118 160 IPR003106 GO:0006355|GO:0043565
Amo20g1080 257 ProSitePatterns 'Homeobox' domain signature. 93 116 IPR017970 GO:0000981|GO:0006355
Amo20g1080 257 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-6-LIKE 1 226 - -
Amo20g1080 257 PRINTS Lambda-repressor HTH signature 98 114 IPR000047 GO:0003677
Amo20g1080 257 PRINTS Lambda-repressor HTH signature 89 98 IPR000047 GO:0003677
Amo20g1080 257 Pfam Homeodomain 63 116 IPR001356 GO:0003677
Amo20g1080 257 CDD homeodomain 63 119 IPR001356 GO:0003677
Amo20g1080 257 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 226 IPR045224 GO:0003700
Amo20g1080 257 ProSiteProfiles 'Homeobox' domain profile. 58 118 IPR001356 GO:0003677
Amo20g1080 257 SUPERFAMILY Homeodomain-like 53 120 IPR009057 -
Amo20g1080 257 SMART HOX_1 61 122 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1080 Amo-Chr20 19787719 19791461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1080 1 179 Homeobox Transcription Factor Family AT2G22430 61.538 3.97e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Amo20g1080 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1080 K09338 - mnt:21402725 280.411
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1080 20 19787719 19791461 Amo10g0644 10 7840179 7843624 hybridization
Amo13g5148 13 151263379 151265995 Amo20g1080 20 19787719 19791461 PCT