Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1074 ATGAAGAAAACATTTTACCACCCCAACGCCACCATGCATCACCCTGACTACAACCATCGTCAGCCACCGCCATTTCGCCGCCACTTCTCGAAGCCAATCGATTTTCACCCCAACCACTACCGTCCGCCGGGACCTCCAAATCCCACCGCCTTCCAGGCTCCCAATTTCGTTCTCCACCTCCGCCGCGGCCGCCGCCATCTCCGCCGCGACCTCATAAACTCGATCATCTCCCAGTGCCCTTCCAAACCACAATCTTTCTCAATTTTTCCCTATTCCTCCGACCATAACTACCACCGCTGTTCCTCCTCCACCGTCGATGCAGCGATCCTCAATTTCCTTCAGTGGGTGGACACGCTCAACGCCGTCGCGTATCTCTGGGAAACGCGCCTCGACGGCATGCACGACCTAACTCCGGAGCTGAAGTCCAATGTGATGGTCCCTTCCGACGAGGACGAACTCTATTCTCGGCTACGCGCTGTCTTCGCGCGTCACGTGAAGAGTCTCATGCAAGAAGCGAAGGAATTGAAGCGTTGGGAAGGGGAGAGTGAGCGGTTAACGAAGGAGATCGCGCGTATGGAGCCACAGAAGAACAAACATTATCAAGTTGGGGAATTTTTTCAGATGAATGAGAATAAGAAAAGGTTTGAGGAAGAGAAAAATCTGGTGGAACGGAGGGTGAGGGAATTTCGGTGCGCCATGGAGTGCCTACTGAAGCTTCTAGAAGAGAAGGGTGGTGTTGATGAGGAAAGGAATGAAGGGGTTAATGGTAATTATTATTATGATGATTATGATTATGATGCTGTGTTTAGGTTTGATGGAAGGTTGAATTGGAAGAGGGTTCACAGTATTATCATGAGGGAGCGTCGTAGACTTGAGGAGGGTTTGCCAATTTACGCTTACCGGAGGGATATTCTTCACGACATTCATCATCAGCAGATAACGGTATTGGTTGGAGAGACTGGTTCTGGAAAGAGTACTCAGCTGGTACAGTTTCTTGCGGATTCAGGTGTAGGAGCTGCTGAGTCCATTATATGCACCCAACCCCGAAAAATTGCTGCGAGATCATTAGCTCAAAGAGTACAGGAAGAAAGCAATGGATGTTATGAAGGCAATGCTATCGATAGTTATTCGACATTTTCATCCTTGAATGAGTTTGATTCTAAAATAACATTCATGACAGACCACTGTTTATTGCAGCATTACATGGCTGATAAGAATTTGTCTGGTGTCTCATGCATCATAGTTGATGAGGCTCATGAAAGGAGCTTAAACACTGATCTGTTGTTGGCATTGATCAAGAATTTACTCTCTAGAAGGGTTGAAATGCGGCTTATCATTATGTCTGCCACTGCTGATGCAAAGCAGCTGTCTGAATACTTCTATAGTTGTCGAATTGTTCATGTGCTCGGAAGAAGTTTTCCTGTGGACGTGAAATATGTTCCTTCTGACTATGCAGGACATTCTGAGTCTGGCATTGCCTCTTACGTTTCTGATGTTGTCAGAATGGCAATCGAGATTCACAAAACAGAGGAAGAGGGCACTATTCTTGCATTTTTGACCTCACAGATAGAAGTGGAATGGGCGTGTGACAACTTTGAAGCTGTGTGTGCAGTTGCTTTGCCCTTACATGGGAAACTTTTGCCCGGTGAGCAATTTCATGTTTTCCAGAACTATCCTGGAAAAAGGAAAGTGATATTTGCAACAAATCTTGCTGAGACATCTCTCACAATTCCTGGCGTTAAGTATGTGATAGATTCTGGTTTGATTAAAGATAGTCGATATGATCCTGGCAGTGGGATGAATGTTCTTAAGGTTTGTTGGATTAGCCAAAGCTCTGCTAATCAACGGGCTGGCCGTGCTGGGAGGACTGAACCTGGTCGGTGCTATAGATTGTACTCTGAAGCTGATTATCAGTGCATGGAACAAAATCAAGAACCTGAAATTAGAAGAGTGCATCTTGGTGTTGCAGTTTTGAGGATCCTTGCTTTAGGGGTGAAGAATGTGCAAGAGTTTGATTTTGTTGATGCTCCAAGTCAAAGATCCATTGAGATGGCTATCCAGAATCTAATCCTCTTAGGAGTCATTCAAATGAAGAATAATGTTATTGAATTAACAAATGAAGGTAGGTACCTGGTAAGAATGGGGATCGAACCTAGGCTTGGTAAACTGATTCTTGGCTGTCTTCATCATACACTGGGTAGAGAAGGCATTGTCCTTGCTGCCTTGATGGCTAATGCTAGCAGCATATTCTGCAGAGTTGGTAGTGAAAAGGATAAGCAAAGATCTGATTGTCTTAAAATGCAATTTTGCCATTGTGATGGCGACCTCTTTACCCTTCTTTCTGTGTACAAGGAATGGGAGGGTTTGCCTCGGGAGAGGAGGAACCAGTGGTGTTGGGAAAATAGTATCAATGCCAAATCTATGAGGAGATGCCAAGACACAATTTTAGAGCTAGAATCCTGTCTTGAGCGTGAACTTAACCTTGTTGTTCCCAGTTACTGGCGTTGGACACCCCAAATGCCCTCCGGATGTGATATGTATCTGAAAAGGGTTATACTGTCCTCCCTTCCTGAGAATGTAGCCATGTACTCTGGATGCAAGCAACTTGGTTATGAAGTGGCACAAACTGGGCAACATGTTCAGCTTCATCCATCTTGTTCATTGCTTGTATTTGCTCAGAAACCTAGTTGGGTGGTTTTTAGTGAGCTTCTTTCACATTCTAATCAATATTTGGTCTGTGTAAGTGCTTTTGATTTTGAATCATTGCACAGCCTTGACCCTCCTCCCTTGTTTGATGTGTGCAATATGGAAAAGCGGAAATTGGAAACCAGGACATTGTCTGGTTTTTGTTGTACTCTTCTCAAGAAATTTTGTGGAAAAGCCAACACTAATTTGATTAGTCTTGTGTCACGCATACGGAAAGTTTGTGAGGATGAACGAATTTCTATTGAAGTTAATGTTGACCACAATGACATTCAGTTATATGCGACATCACATGATATGGAAACAGCCGTTCAATATGTAAATGAGGTTTTAGAATGTGAGAAAAAGTGGTTACGTACTGAGTGTATTGAAAAATGTTTGTATCATGGGTCTGGTTTCTCACCTATAGCTTTGTTTGGCTCTGGTGCAGAAATTAAGCATTTAGAACTTGGGAAGCGTTCCCTGAGTGTTGACGTTTGTCACCCAAACACAGATGCAATTGAAGACAAACAGCTCCTGATGTTTTTGGAGAAGAATACCTCAGCAAGTGTCTGTTCTGTCCACAAGTACACATGCACTGGAAGGGATGTTGAGGATAGTGAAAAGTGGGGCAGGATTACATTTCTTTCCCCGGATGCTGCTTTAAGAGCTGCTGAGCTAGATGGTGAAGAGTTTTTTGGCTCTCCTTTGAAAATTTCTCACTCACAAACAGCTTCTGGAGATAAATCATTTTTGTTTCCTGCCGTCAAAGCAAAAATCTTTTGGCCTCGTAGGCTTAGCAAGGGGGTTGCGATAGTTAAATGTGACATAAAGGATGTTGATATCATGTTGAGAGATTTCTATAACCTTTCTATAGGAGGAAGGTATGTACGGTGTGAACCTGGTAGAAAGGATGTGGATAGTGTGGTGATAAGTGGGTTTGACAAGGAGCTCTCAGATGCTGAAATTCTAGATGTAGTAAGAAATGCTACAAGTATAAGGATTTCAGACTTTTTCTTGATTAGAGGAGATGCTGTTGGGAATCCACCAGTCAATGCCTGTGAAGAAGCGCTTCTTAAAGAAATTTCCCCCTTCATGCCCAAGAAAGATCCCCATATTAACTCTTGTCGGGTTCAAGTCTTCCAACCTGAGCCCAGGGATGTATACATGAGAGCTTTAATCACGTTTGATGGAAGACTACATTTAGAGGCAGCAAAAGCTTTAGAGCAAATTGAGGGAAAGGTGTTGCCAGGATGTCTTTCATGGCAGAAGATAAAATGTCAGCGCGTCTTCCATAGCTCCTTGATAGTTCCTCTGCCAGTGTACCGTGTAATTAGGGAAGAATTGGAGAAAATACTTAAAAGCTTCAGTAATTTAAAGGGTATTTCATTATTTTGTATCTTTTCTTCCTTGGATGTTTGTAACCCATCTTTCTATGCCTCTTTTTGA 4131 0.4345 MKKTFYHPNATMHHPDYNHRQPPPFRRHFSKPIDFHPNHYRPPGPPNPTAFQAPNFVLHLRRGRRHLRRDLINSIISQCPSKPQSFSIFPYSSDHNYHRCSSSTVDAAILNFLQWVDTLNAVAYLWETRLDGMHDLTPELKSNVMVPSDEDELYSRLRAVFARHVKSLMQEAKELKRWEGESERLTKEIARMEPQKNKHYQVGEFFQMNENKKRFEEEKNLVERRVREFRCAMECLLKLLEEKGGVDEERNEGVNGNYYYDDYDYDAVFRFDGRLNWKRVHSIIMRERRRLEEGLPIYAYRRDILHDIHHQQITVLVGETGSGKSTQLVQFLADSGVGAAESIICTQPRKIAARSLAQRVQEESNGCYEGNAIDSYSTFSSLNEFDSKITFMTDHCLLQHYMADKNLSGVSCIIVDEAHERSLNTDLLLALIKNLLSRRVEMRLIIMSATADAKQLSEYFYSCRIVHVLGRSFPVDVKYVPSDYAGHSESGIASYVSDVVRMAIEIHKTEEEGTILAFLTSQIEVEWACDNFEAVCAVALPLHGKLLPGEQFHVFQNYPGKRKVIFATNLAETSLTIPGVKYVIDSGLIKDSRYDPGSGMNVLKVCWISQSSANQRAGRAGRTEPGRCYRLYSEADYQCMEQNQEPEIRRVHLGVAVLRILALGVKNVQEFDFVDAPSQRSIEMAIQNLILLGVIQMKNNVIELTNEGRYLVRMGIEPRLGKLILGCLHHTLGREGIVLAALMANASSIFCRVGSEKDKQRSDCLKMQFCHCDGDLFTLLSVYKEWEGLPRERRNQWCWENSINAKSMRRCQDTILELESCLERELNLVVPSYWRWTPQMPSGCDMYLKRVILSSLPENVAMYSGCKQLGYEVAQTGQHVQLHPSCSLLVFAQKPSWVVFSELLSHSNQYLVCVSAFDFESLHSLDPPPLFDVCNMEKRKLETRTLSGFCCTLLKKFCGKANTNLISLVSRIRKVCEDERISIEVNVDHNDIQLYATSHDMETAVQYVNEVLECEKKWLRTECIEKCLYHGSGFSPIALFGSGAEIKHLELGKRSLSVDVCHPNTDAIEDKQLLMFLEKNTSASVCSVHKYTCTGRDVEDSEKWGRITFLSPDAALRAAELDGEEFFGSPLKISHSQTASGDKSFLFPAVKAKIFWPRRLSKGVAIVKCDIKDVDIMLRDFYNLSIGGRYVRCEPGRKDVDSVVISGFDKELSDAEILDVVRNATSIRISDFFLIRGDAVGNPPVNACEEALLKEISPFMPKKDPHINSCRVQVFQPEPRDVYMRALITFDGRLHLEAAKALEQIEGKVLPGCLSWQKIKCQRVFHSSLIVPLPVYRVIREELEKILKSFSNLKGISLFCIFSSLDVCNPSFYASF* 1377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1074 1376 PANTHER ATP-DEPENDENT RNA HELICASE 106 1346 - -
Amo20g1074 1376 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 106 1346 - -
Amo20g1074 1376 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 848 923 IPR011709 -
Amo20g1074 1376 Pfam DEAD/DEAH box helicase 304 456 IPR011545 GO:0003676|GO:0005524
Amo20g1074 1376 Gene3D - 276 471 IPR027417 -
Amo20g1074 1376 SMART ha2_5 684 780 IPR007502 GO:0004386
Amo20g1074 1376 Pfam Helicase conserved C-terminal domain 504 623 IPR001650 -
Amo20g1074 1376 SMART ultradead3 293 478 IPR014001 -
Amo20g1074 1376 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 305 469 IPR014001 -
Amo20g1074 1376 CDD DEXHc_RHA-like 312 468 - -
Amo20g1074 1376 Gene3D - 646 689 IPR042035 -
Amo20g1074 1376 Pfam Helicase associated domain (HA2) 685 779 IPR007502 GO:0004386
Amo20g1074 1376 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 498 664 IPR001650 -
Amo20g1074 1376 Coils Coil 212 232 - -
Amo20g1074 1376 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 293 802 IPR027417 -
Amo20g1074 1376 Coils Coil 168 188 - -
Amo20g1074 1376 SMART helicmild6 530 624 IPR001650 -
Amo20g1074 1376 MobiDBLite consensus disorder prediction 1 22 - -
Amo20g1074 1376 CDD SF2_C_RHA 473 632 - -
Amo20g1074 1376 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 411 420 IPR002464 -
Amo20g1074 1376 Gene3D - 472 644 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1074 Amo-Chr20 19494358 19499375 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1074 K12818 - gmx:100810008 1851.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1074 20 19494358 19499375 Amo10g0636 10 7551791 7558751 hybridization