Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1056 ATGGACCAGACAGGGCAACGAGATTCACAGGATGTCTGGGATTATAGCTGCGTGTTCGTAGTTATGGTTGATAATGCCGATGTTCTGTTTGCTCACTGCCCTAGCTACGACTTTTCATCTAATTTTGACCGAGTCCATGCGTCGCAGGATGCTGATGATGGAATGAGCGGCGAAACCGTGCCGGTAGAGGAAGCAAAAGTGATGGATTCGTCCGCCGCAGATGCAGACATAGATGCAGAAGACGTCCTTACGACGGAGTTCACAAGCCTACAGGCAGCTTATAACTACTACAACGAATACGGTCGCATCAAGGGATTCTCGGTCAGGAGGTCCAAGGTGGGACGCAGAATAAAGCAGGGGGCAGATGGCAAAATAATTTGGCAGATATTCGTATGCTCGAGGGAAGGAGAGCGAGACAGAAAACACATGCAGCGGGAAGACAGGAAGAAGGATCCTCGACCGATCACGCGGTGCGGGTGTGAAGCCCGGATTAAGGCCCACGTTGATGATGCCAGCGGGCGATGGTTTGTTGAACAATTTTGA 543 0.5101 MDQTGQRDSQDVWDYSCVFVVMVDNADVLFAHCPSYDFSSNFDRVHASQDADDGMSGETVPVEEAKVMDSSAADADIDAEDVLTTEFTSLQAAYNYYNEYGRIKGFSVRRSKVGRRIKQGADGKIIWQIFVCSREGERDRKHMQREDRKKDPRPITRCGCEARIKAHVDDASGRWFVEQF* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1056 180 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 55 180 - -
Amo20g1056 180 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 55 180 - -
Amo20g1056 180 Pfam FAR1 DNA-binding domain 95 180 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1056 Amo-Chr20 18710554 18711549 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo20g1056 FAR1 3.8e-16 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1056 - - ahf:112777976 262.692