Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1018 AGTTCTCTACAGAAAAAAAAAAACGCCAAAATCTTCAACTCAGGCCAACAATCACACCGAGGCCCAGGAAGTAGGATATTGTTAATTACCATCTGTAAACCATCTAGGGCTTACTGTCTTACAATAGGACCTTACTATATCTCATCTAGGTCTCTGATGAATGCACTTCCAAATCTAACTTTCATAGTAGAGGCAAAAGTAGCAACAACCAGAATTTTCCAAATGATTGAGCAAATACCAATCATAAACTCTCACCAACAAAAAGGAAGGATCTTAAGCCATGTGAGAGGAGAAATCACATTCACAAAAATTGACTTCACTTATCCATCACGACCGGACACACCGATTCTCCAAGGACTGGATCTGAAGTTTCCAGCATGTAAAACAATAGGCCTAGTTGGAGGCAGTGGTTCTGGAAAATCCACAATCATCTCTTTGATTGAAAGGTTCTATGATCCTTTATATGGTGAGATATTGCTTGATGGACATGATATAAAGAGGCTTGAGCTTAAGTGGCTAAGGTCACAAATGGGACTTGTTAATCAGGAGCCTATTCTGTTTGCAACATCAATTAGGGAGAATATTCTGTTTGGCAAGGAAGGTGCTTCAATGGAAGCTGTTATAGATGCAGCTAAGGCTGCAAATGCACATGGTTTCATTGTTAAACTTCCTAGTGGATATGAAACTCAAGTGGGACAACTTGGGACTCAGTTATCTGGAGGACAAAAGCAAAGAATTGCAATAGCAAGGGCCCTAATTCGCAACCCGAAAATCCTACTCCTTGATGAAGCCACAAGTGCATTGGATTCAGAGTCTGAAAGAATAGTGCAAGAGGCCCTTGATTTGGCTTCAAGAGGCAGAACAACAATCATTGTAGCTCATCGCTTATCGACGATTCGAAATGCTGACTGGATAGTAGTCCTTCAATCAGGAAGAGTTGTTGAATCTGGCTCCCATGTTGAGCTACTCAAACTTAACAATGGACAAGGTGGTGCTTATAGCAAAATGCTAAAACTACAACAACAAACAAATCAAAATGAAGATTCAACATTGAATCATGTGAGCAAGAGTCCCCAAGTTATGTCATATTTAACAAGTCCAAGATCAATGCCAGGTACTCCAACTCATCATTCATTCACCTCACCAATATACTCAATCAGTGTTCTGGGGTCCCCTTTTGATGACTACACTGAGAATTCTGAGATAACTTCAAAAGCAAGTTTCTCGCAATGGCGTTTGATAAGAATGAATTCCCCTGAGTGGAAGTATGCTCTGATAGGATGCTTAGGTGCTATTGGCTCTGGAATTTGCCTAATTCAGCACTCGAGCTTCGCCATCATGGGCGAGAAATTGCTAAAGAGGGTGCGCGAGAATCTGCTAGAGAAAATCCTTACATTTGAAATAGGATGGTTTGATCAAGAAGATAACAGCAGTGCAGCCATCTGCGCTCGTTTGGCGTTTGATGCAAACTTGGTCAGGTCTCTTGTAGCAGAAAGAATGTCATTACTAGTTCAAGTATTTGTCACTGCCACCCTGGCTTTCGCACTCGGTTTATATGTCTCATGGAAGGTGGCAATGGTAATGATAGCTATGCAGCCCTTGATCATTGCTTGTTTCTATTCCAAATTCATGCTTATGAAAAGTATGTCAGGTAAAGCAAGAAAGGCTCAAAGTGAAGGTAGTCAATTAGCAATGGAAGCTACCATTAACCATAGAACTATTGCTGCATTTTCATCAGAGAAAAGGGTATTGAATTTGTTCAAAAATTCAATGAAAGGACCTCATTTGGAAACCGTAAAGCAATCATGGATTTCAGCTGCAATTTTGTCGTTGTCACAGTTCATAACTACAGCTTCTATAACCTTAACATTTTGGTATGGAGGATTGCTACTAAACAAAAAGATGGTGAATTCAAATGACCTTTTGCAAGTTTTCTTAATACTGATGGGAACTGGAAGACAAATTGCTGAGACAGTAAGCATGACTTCGGACATAGCGAAAAGCGGGAAAGCCGTTAGCTCGATTTTTGCAATTTTGGACAGGAAAACTCAGATTGAACCTGAAGATCCTAGGCTTATGAAGTTCAGAAAGAACAACAACATAAAGGGTCATGTGAAGTTAAAAGATGTGTTCTTTTCATACCCATCAAGGCCAGAACAAATGATCCTAAAGGGTCTTAGTCTTGAAATTGAAGCTGGGAAAACAATTGCATTGGTGGGGCAAAGTGGGTCAGGGAAATCCACTATCATTGGACTAATTGAAAGATTTTATGACCCAATTAATGGATCAATATTTATTGATGGTTGTGACATTAGGGAATTTGATTTGAGAAGTTTGAGGTTACATATTGCATTGGTGAGTCAAGAGCCTACACTCTTTGGTGGAACTATACGTGATAACATTGTGTATGGAAAGATTGATGCATCTGAAGATGAAATAAGAAAGGCAGTGCGTCTTGCAAATGCTCATGAGTTTATAAGTTCAATGAGAGATGGATATGATACATACTGTGGAGAAAGAGGAGTGCAGCTTTCAGGGGGACAAAAGCAAAGAATTGCAATTGCCAGAGCAATACTAAAGAACCCATCAATCCTTCTCATGGACGAAGCAACAAGTGCTCTCGACAGCGTTTCAGAGAATCTAGTGCAAGATTCCCTGGAGAAAATGATGGTTGGAAGAACATGTGTGGTTATTGCTCATCGTTTGTCTACAATTCAGAATGTGGACACCATTGCTGTGATCAAGAATGGGAAATTGGTGGAGCAAGGTTCACACTCCCAGTTAATGAATGTTGGAACAAAGGGTGCTTACTACTCCATGATTAGGTTACAACGTGGGACTAACTCTACTAGCTGA 2856 0.4016 SSLQKKKNAKIFNSGQQSHRGPGSRILLITICKPSRAYCLTIGPYYISSRSLMNALPNLTFIVEAKVATTRIFQMIEQIPIINSHQQKGRILSHVRGEITFTKIDFTYPSRPDTPILQGLDLKFPACKTIGLVGGSGSGKSTIISLIERFYDPLYGEILLDGHDIKRLELKWLRSQMGLVNQEPILFATSIRENILFGKEGASMEAVIDAAKAANAHGFIVKLPSGYETQVGQLGTQLSGGQKQRIAIARALIRNPKILLLDEATSALDSESERIVQEALDLASRGRTTIIVAHRLSTIRNADWIVVLQSGRVVESGSHVELLKLNNGQGGAYSKMLKLQQQTNQNEDSTLNHVSKSPQVMSYLTSPRSMPGTPTHHSFTSPIYSISVLGSPFDDYTENSEITSKASFSQWRLIRMNSPEWKYALIGCLGAIGSGICLIQHSSFAIMGEKLLKRVRENLLEKILTFEIGWFDQEDNSSAAICARLAFDANLVRSLVAERMSLLVQVFVTATLAFALGLYVSWKVAMVMIAMQPLIIACFYSKFMLMKSMSGKARKAQSEGSQLAMEATINHRTIAAFSSEKRVLNLFKNSMKGPHLETVKQSWISAAILSLSQFITTASITLTFWYGGLLLNKKMVNSNDLLQVFLILMGTGRQIAETVSMTSDIAKSGKAVSSIFAILDRKTQIEPEDPRLMKFRKNNNIKGHVKLKDVFFSYPSRPEQMILKGLSLEIEAGKTIALVGQSGSGKSTIIGLIERFYDPINGSIFIDGCDIREFDLRSLRLHIALVSQEPTLFGGTIRDNIVYGKIDASEDEIRKAVRLANAHEFISSMRDGYDTYCGERGVQLSGGQKQRIAIARAILKNPSILLMDEATSALDSVSENLVQDSLEKMMVGRTCVVIAHRLSTIQNVDTIAVIKNGKLVEQGSHSQLMNVGTKGAYYSMIRLQRGTNSTS* 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1018 951 ProSitePatterns ABC transporters family signature. 238 252 IPR017871 GO:0005524
Amo20g1018 951 ProSitePatterns ABC transporters family signature. 844 858 IPR017871 GO:0005524
Amo20g1018 951 CDD ABC_MTABC3_MDL1_MDL2 705 944 - -
Amo20g1018 951 CDD ABC_6TM_Pgp_ABCB1_D2_like 414 685 - -
Amo20g1018 951 Gene3D - 89 341 IPR027417 -
Amo20g1018 951 PANTHER OS04G0481700 PROTEIN 438 946 - -
Amo20g1018 951 Pfam ABC transporter 117 266 IPR003439 GO:0005524
Amo20g1018 951 Pfam ABC transporter 723 872 IPR003439 GO:0005524
Amo20g1018 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 699 944 IPR027417 -
Amo20g1018 951 Gene3D ABC transporter type 1, transmembrane domain 47 670 IPR036640 GO:0005524|GO:0016021
Amo20g1018 951 SMART AAA_5 126 326 IPR003593 -
Amo20g1018 951 SMART AAA_5 732 918 IPR003593 -
Amo20g1018 951 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 424 667 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g1018 951 SUPERFAMILY ABC transporter transmembrane region 423 687 IPR036640 GO:0005524|GO:0016021
Amo20g1018 951 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 438 946 IPR039421 -
Amo20g1018 951 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 90 340 IPR027417 -
Amo20g1018 951 MobiDBLite consensus disorder prediction 1 21 - -
Amo20g1018 951 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 705 941 IPR003439 GO:0005524
Amo20g1018 951 PANTHER OS04G0481700 PROTEIN 48 437 - -
Amo20g1018 951 CDD ABC_MTABC3_MDL1_MDL2 99 340 - -
Amo20g1018 951 Pfam ABC transporter transmembrane region 423 648 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo20g1018 951 Gene3D - 691 949 IPR027417 -
Amo20g1018 951 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 99 335 IPR003439 GO:0005524
Amo20g1018 951 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 48 437 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1018 Amo-Chr20 18107023 18111699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1018 448 951 Calmodulin-binding Proteins AT2G36910 39.683 7.17e-111 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1018 K05658 - gmx:100804664 1347.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1018 20 18107023 18111699 Amo10g0600 10 6815292 6819864 hybridization