Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1002 ATGGCAGATTGGTTTCTTCTTATGTTCCAGTTCTTGCTTCTTGGCCCAGCTTTAACATCTTCTTCTCCAGTTCAAGATCCTGAATCCGTTGTGCACGAACTACACAAGATTACCAATGATTCCAGGAGAAATTTGGCATACTTTTCTTGCAGCACAGGTAACCCAATCGACGATTGTTGGAGGTGTGATCCCAATTGGGAAAGAAACCGGAAGCGCCTCGCCGACTGCGCCATTGGCTTCGGGAGGCGCGCAATCGGAGGTAGGGATGGAAAATATTACGTGGTCACTAATCCTAGTGACCACGCAATGGACCCCAAGGCAGGTACTCTAAGACATGCTGTGATCCAAGAAGAGCCCTTATGGATAATCTTCAAGCATGACATGTTTATAAAACTAAAAATGGACCTAATTGTAAATTCTCACAAAACAATTGATGGCAGAGGAGCAAATATTCACATTGGTAGAGGACCCTGCATTGAAATAAGGAATAAGTCCAACATCATAATTCATGGCATACATATCCATGATTGTGTGAGAGGTGGTAATGGGGTTTTGATATATGGGAGTAGTTATGTTTGGGTGGACCATTGCTCATTTTCAAATTGCTATGATGGGCTTATTGATGTTGTTCATGGGTCAACGGCTGTTACAATTTCAAATAATTATATGACACACCATAATAAAGTTATGCTTTTAGGACACAGTGATTCCAATGAAGAAGAGGACAAGAATATGCAAGTAACTGTGGCATTCAACCATTTTGGAGAAGGGCTTGGAGGAAGAATGCCAAGGTGCAGGTTTGGGTACTTTCATGTGGTGAATAATTATTATACCCATTGGCAACAGTATGCAATAGGAGGAAGTTCCTCCCCAACTATTTTTAGCCAAGGGAACAGATTTGTTGCTCCTCATGATGTTGATCACAAAGAGGTTACGAAACACTTTGGTTCATCAAAAGATGAGTGGAAGAGATGGAATTGGAGATCTGAAGGGGATTTAATGTTGAATGGTGCCTTCTTCACAGAATCTGGAGATGGAGCACCTTTCTTTTATGAGAAGGCATCAAGCATGGAAGGAAGACCAGCCATGTTAGTGACTTTAATGACAGCAGGAGCTGGAGCACTTGCTTGCAAAAATGGACAACTCTGCTAG 1152 0.421 MADWFLLMFQFLLLGPALTSSSPVQDPESVVHELHKITNDSRRNLAYFSCSTGNPIDDCWRCDPNWERNRKRLADCAIGFGRRAIGGRDGKYYVVTNPSDHAMDPKAGTLRHAVIQEEPLWIIFKHDMFIKLKMDLIVNSHKTIDGRGANIHIGRGPCIEIRNKSNIIIHGIHIHDCVRGGNGVLIYGSSYVWVDHCSFSNCYDGLIDVVHGSTAVTISNNYMTHHNKVMLLGHSDSNEEEDKNMQVTVAFNHFGEGLGGRMPRCRFGYFHVVNNYYTHWQQYAIGGSSSPTIFSQGNRFVAPHDVDHKEVTKHFGSSKDEWKRWNWRSEGDLMLNGAFFTESGDGAPFFYEKASSMEGRPAMLVTLMTAGAGALACKNGQLC* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1002 383 SMART amb_all 127 306 IPR002022 -
Amo20g1002 383 Gene3D - 53 376 IPR012334 -
Amo20g1002 383 PRINTS Pollen allergen Amb family signature 325 349 IPR018082 -
Amo20g1002 383 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Amo20g1002 383 PRINTS Pollen allergen Amb family signature 354 377 IPR018082 -
Amo20g1002 383 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Amo20g1002 383 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Amo20g1002 383 PRINTS Pollen allergen Amb family signature 261 280 IPR018082 -
Amo20g1002 383 PANTHER PECTATE LYASE 18-RELATED 3 379 IPR045032 GO:0030570
Amo20g1002 383 SUPERFAMILY Pectin lyase-like 36 376 IPR011050 -
Amo20g1002 383 Pfam Pectate lyase 135 300 IPR002022 -
Amo20g1002 383 PANTHER PECTATE LYASE 3 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1002 Amo-Chr20 17634772 17644348 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1002 5 383 Polysaccharide Lyase AT5G63180 63.772 4.11e-180 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1002 K01728 - gmx:100801136 606.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1002 20 17634772 17644348 Amo10g0576 10 6413879 6420375 hybridization