Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g1000 ATGGCAATTCCATTACCATTTATGTTACTTCTACTATTCCTAGCACCTTCCATTATTTCTTCATCCCCAATTCAAGACCCTGAATTAGTAGTAGAAGAAGTGCACAGGAGCATTAACAATGCATCGGCAAGGAGGAACTTGGGATTTCTTTCTTGTGGGAATGGCAACCCGATCGACGATTGTTGGAGGTGTGATCCGAATTGGGAGAAGAACCGGAAGCGGCTGGCRGACTGTGCCATCGGATTCGGCAAGCACGCCATCGGAGGAAGAGACGGCAAAATATACGTGGTGACGGACCCCGGCGACCACCCTGTTAGCCCAAAGCCAGGGACACTAAGATATGGTGTGATTCAAGAAGAGCCATTGTGGATTGTGTTCAAGCGTGACATGGTAATTAAGCTTAAACAAGAGCTAATGATGAATTCTTTCAAGACCATTGATGGAAGAGGAGTTAGTGTCCACATTGCTGGTGGACCCTGCATCACAATTCAATATGTTTCAAACATTATAATCCATGGAATTAACATTCATGATTGTAAGCAAGGTGGGAATGCCTATGTTAGAGACTCTCCTTCACATTACGGCTGGAGGACTCTTTCCGACGGCGACGGCGTCTCCATCTTTGGTGGCAGCCATGTTTGGGTGGACCATTGCTCGCTGTCGAATTGTCGCGACGGATTAATCGACGCCATTCATGGATCTACTGCCATTACCATCTCCAATAACTATSTGACTCACCATAACAAGGTTATGCTTTTGGGACATAGTGATACTTTCACTCAAGATAAGAATATGCAAGTTACCATTGCCTTTAACCATTTTGGAGAAGGCCTAGTTCAGAGGATGCCAAGATGTAGGTATGGGTATTTCCATGTTGTGAACAATGACTATACTCATTGGCAAATGTATGCCATTGGAGGAAGTGCTGCACCAACTATCAACAGCCAAGGCAATAGATTTCTTGCTCCTAATGACAATACCTTCAAAGAGGTGACAAAGCGTGAGGATACACCACAAAGTAAATGGAAGAATTGGAATTGGAGGTCTAATGGAGATTTAATGTTAAATGGTGCATTCTTTACCCCATCAGGAGCAGGTGCATCTTCAAGCTATGCAAGAGCTTCAAGTTTGGCAGCCAAATCTTCTTCTCTTGTTGGTTCTATCACTGCTTCAGCTGGATCTCTTAAATGTAGAAAGGGATCACGCTGTTAA 1212 0.4406 MAIPLPFMLLLLFLAPSIISSSPIQDPELVVEEVHRSINNASARRNLGFLSCGNGNPIDDCWRCDPNWEKNRKRLADCAIGFGKHAIGGRDGKIYVVTDPGDHPVSPKPGTLRYGVIQEEPLWIVFKRDMVIKLKQELMMNSFKTIDGRGVSVHIAGGPCITIQYVSNIIIHGINIHDCKQGGNAYVRDSPSHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIHGSTAITISNNYXTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRYGYFHVVNNDYTHWQMYAIGGSAAPTINSQGNRFLAPNDNTFKEVTKREDTPQSKWKNWNWRSNGDLMLNGAFFTPSGAGASSSYARASSLAAKSSSLVGSITASAGSLKCRKGSRC* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g1000 403 PANTHER PECTATE LYASE 1 400 - -
Amo20g1000 403 SUPERFAMILY Pectin lyase-like 37 398 IPR011050 -
Amo20g1000 403 SMART amb_all 129 326 IPR002022 -
Amo20g1000 403 Gene3D - 55 396 IPR012334 -
Amo20g1000 403 PANTHER PECTATE LYASE 18-RELATED 1 400 IPR045032 GO:0030570
Amo20g1000 403 PRINTS Pollen allergen Amb family signature 281 300 IPR018082 -
Amo20g1000 403 PRINTS Pollen allergen Amb family signature 101 126 IPR018082 -
Amo20g1000 403 PRINTS Pollen allergen Amb family signature 303 322 IPR018082 -
Amo20g1000 403 PRINTS Pollen allergen Amb family signature 374 397 IPR018082 -
Amo20g1000 403 PRINTS Pollen allergen Amb family signature 345 369 IPR018082 -
Amo20g1000 403 PRINTS Pollen allergen Amb family signature 137 153 IPR018082 -
Amo20g1000 403 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Amo20g1000 403 PRINTS Pollen allergen Amb family signature 201 222 IPR018082 -
Amo20g1000 403 Pfam Pectate lyase 136 320 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g1000 Amo-Chr20 17566491 17568986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g1000 1 403 Polysaccharide Lyase AT5G63180 78.079 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g1000 K01728 - gmx:100782388 738.413
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g1000 20 17566491 17568986 Amo10g0574 10 6361297 6363804 hybridization