Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0992 ATGGACACATTTGGATCAATGGAGCTTGATTTCTCTTCATACACCCAGCAGCAGCAGCAACAGCAGGGTTTCAATGGGGTTTCTTTGACTCTAGGGTTACAACAGCACGGTGGAAGCGGGGTGAGTCTGGCGTTCCCTCTTCCTCCGGTGAGCAGTCATCATAGCTCGCTCTTCTACGCAACAACAATTGATGCTACTATGCCTACTATTGTTGGAATGGCACCGAAAAACCAGGATGCCATTGATGCTGCTATTGTTGGAATGCTTGCAGATCCTAAAGAGGTAAGGGCTAGAATCAGAGATGTTCACTTTTTACCTTTCAATTCTATTGACAAGAGAACTGCTCTGACTTACATTGATGCTGATGGAAACTGGCACCGTGCAAGCAAAGGCGCTCCGGAGCAGGGAACAATTTTTAGTTTATTCATGATTTGTGAGAGGGATGATGCTAAGAAGATGGTTCATGCCATTATTGACAAGTTCGCCGAAAGAGGCCTTCGTTCCCTAGCCATTTCAAGACAGGAAATTCCTGAGAAAAGAGATGTTAAAATGAAATAA 558 0.4462 MDTFGSMELDFSSYTQQQQQQQGFNGVSLTLGLQQHGGSGVSLAFPLPPVSSHHSSLFYATTIDATMPTIVGMAPKNQDAIDAAIVGMLADPKEVRARIRDVHFLPFNSIDKRTALTYIDADGNWHRASKGAPEQGTIFSLFMICERDDAKKMVHAIIDKFAERGLRSLAISRQEIPEKRDVKMK* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0992 185 PANTHER PLASMA MEMBRANE ATPASE 76 180 - -
Amo20g0992 185 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 75 180 IPR023299 GO:0000166
Amo20g0992 185 Gene3D - 57 185 IPR023299 GO:0000166
Amo20g0992 185 PANTHER CALCIUM-TRANSPORTING ATPASE 76 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0992 Amo-Chr20 17393687 17394536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0992 76 180 Primary Pumps ATPases AT2G24520 67.925 4.20e-46 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0992 K01535 - ahf:112801147 222.631