Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0987 TCGGCGCTACCCAACCGGTCTTCCCGCACGATTGGAGTGTTTCCTTCAAGCTTGGTGTTCGCTGCTGCCATCATCCCGCGCGCCTCCCTCGTGCTACCGTCGAGCATCGGTCGTCGACTAGGAGTTCTTTGTTGCCGTCGCCTGGCCGCCGGACATCCGCACGCCCGTGTGGACCTGTGTCGCACCATACTCATCTTTGAACGCCGCATCTTCTTTGCGCTTTTATGGTGGTGCAATGGGATTGAGTTCTTGCTATTTATATATGGTGGGGCTCCATACCAGACTCAGAAGAGTAAGCTTAGGAGAGGTGTTGATATTGTTGTTGGCACTCCAGATCGCGTGAAGGATCATATAGAGAGGGAAAATATTGATCTGAGCCAGCTAAAGTTTCGTGTCCTTGATGAGGCTAATGAGATGCTCAGAATGGGTTTTGTTGAAGATGTGGAACTAATTTTAAGTGCAGCCAAAGAATTCAATACCAAACTAGCAGAATGGAGAACCACCTCAAGAGAAGGTGTGATTGTAACAATCTTTTTTTGTCTTTGTTAA 549 0.4845 SALPNRSSRTIGVFPSSLVFAAAIIPRASLVLPSSIGRRLGVLCCRRLAAGHPHARVDLCRTILIFERRIFFALLWWCNGIEFLLFIYGGAPYQTQKSKLRRGVDIVVGTPDRVKDHIERENIDLSQLKFRVLDEANEMLRMGFVEDVELILSAAKEFNTKLAEWRTTSREGVIVTIFFCLC* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0987 182 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 85 155 - -
Amo20g0987 182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 158 IPR027417 -
Amo20g0987 182 Pfam DEAD/DEAH box helicase 85 159 IPR011545 GO:0003676|GO:0005524
Amo20g0987 182 Gene3D - 68 173 IPR027417 -
Amo20g0987 182 PANTHER DEAD (ASP-GLU-ALA-ASP) BOX HELICASE 21 85 155 - -
Amo20g0987 182 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 174 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0987 Amo-Chr20 17224446 17225708 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0987 89 148 Eukaryotic Initiation Factors Gene Family AT3G13920 41.667 3.79e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0987 K16911 - nnu:104610854 119.783