Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0980 ATGATAAATATAATCGAATTTAGAATTTTGCTAGAAACAACACTCTTGGTTGTTCTTTTCGCTTGTCAACGGCGAAGAAGACATATGTCAATAGAAATCAAGATGATGACAAAAAATTTTAAGAAAAAATTAAGTAAAGGTGGTTTCGACTCTGTATACAAAGGGAAGATACAAAATGGGTCTCTTGTAGCAATAAAGATCAACCTCGGAAGAATTCACTATATGAATGTGGTAAGACTTATTGAATTTTGTGTTGATGGATCAAAGTGTGACATTGTCTATAATTTTATAAAACATTTTTTAAGTTATGAAAAAATATATGAGATATCGTTGGTAGTAGTAAGAGATAATAGCATTGTCACTTTGACCGATCAAAGAGGGATAATTGGATACATTGCACCTGAATTATTTTACAACAAACTTGAGGGAATCTCCTACAAGGCCGATGTTTATAGCTTTGGAATGTTGTTGATGAAAATGACAAATAGAACGAAGAATTTAAACCCACATACAGAGAATTCAAGCAAAGTATTCTTTCCCACCTGGATCTATAATCAATTCAGCAATGATACAAATATAGAATTGGATTATAGCATAGAGGATCAGAAGAACATAATTAAGAAGATGATAATTGTTGCACTGTGGTGTATCCAGCTAAAATCTCGTGATCGTCCTTCCTTGAAACAACTTGTGGATATACTTGAAGGAGAAGTTGAACGCCTAATAATGCCTCCAAAGCCTTCCCTGTATCCAGACGAAAAACTTGATTCAAAGTTGGACCAAATATCAACATCATATTATGACTTAAAATGTGCTAATAGTAGTTACTTTTAA 834 0.3261 MINIIEFRILLETTLLVVLFACQRRRRHMSIEIKMMTKNFKKKLSKGGFDSVYKGKIQNGSLVAIKINLGRIHYMNVVRLIEFCVDGSKCDIVYNFIKHFLSYEKIYEISLVVVRDNSIVTLTDQRGIIGYIAPELFYNKLEGISYKADVYSFGMLLMKMTNRTKNLNPHTENSSKVFFPTWIYNQFSNDTNIELDYSIEDQKNIIKKMIIVALWCIQLKSRDRPSLKQLVDILEGEVERLIMPPKPSLYPDEKLDSKLDQISTSYYDLKCANSSYF* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0980 277 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 2.8 116 257 - -
Amo20g0980 277 ProSiteProfiles Protein kinase domain profile. 1 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0980 277 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 2.8 26 99 - -
Amo20g0980 277 PANTHER RUST RESISTANCE KINASE LR10-RELATED 26 99 IPR045874 GO:0004672
Amo20g0980 277 PANTHER RUST RESISTANCE KINASE LR10-RELATED 116 257 IPR045874 GO:0004672
Amo20g0980 277 SUPERFAMILY Protein kinase-like (PK-like) 24 234 IPR011009 -
Amo20g0980 277 SMART serkin_6 38 233 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0980 277 Gene3D Phosphorylase Kinase; domain 1 19 69 - -
Amo20g0980 277 Pfam Protein kinase domain 122 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0980 277 Gene3D Transferase(Phosphotransferase) domain 1 104 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0980 Amo-Chr20 17087055 17088164 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0980 32 250 Receptor kinase-like Gene Family AT5G39030 32.432 7.20e-42 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Amo20g0980 Pkinase 5.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0980 - - aip:107619931 268.855