Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0974 ATGCAGGACGAGATTGATTTCTTGCTAAGCCAGATTTCAAAGGGGAGCGCCACCGCCGCCACCCTAACCACCGCATCTACCTTCTCCTTCTTCTCCTCTCTTTTAAACACTGAACCAGTAGAACACAGCCCCTGTCTCTCTCGTTCTTTCTCGTTCGCAGAACAAATCAAGCTCAAGCTCCTATTCTCTTCATCTCAGGTGAGCTCCAGCACGCCGGCGCCACCTGCAGCAGCGTCTATCCCCACCACCGCCGCGCCTCTCTCTCTCCTTCTATCCCCATTCAGTTCTGGCTCGCATATCTTCTCAGCGCCGCAACCATCATCTCCTCCAGTCAATGCTTCCAGTGTGATAGTGATCCTTCTAAGAGGTTCATCGTGTTTTCCAGATGAGATTCTTGAGCGTGTTATTGGGATGCTAAAATCAAGAAAGGACAGAAGCTCTGTGTCACTGGTTTGCAAGGAGTGGTACAACGCTGAGAGATGGTCAAGGAGGAACGTGTTCATAGAGCTTAGGCTTAAGAGGATGACTGTTACTGATGAGAGTTTGAAGTTCTTGGTGCGCTCTTTTCCAAACTCCAAAGCTATTTCCCTTCAAAATTGTGATGGTTTCAGCACTGATGGTTTGGCTGCAATTGCTGCTGATTGCAAGTTAATTGATTGGAGACGAGATGTTGCTTTCGCGGGCTATGAGGTCTCAATACAAATGGATGTTTCTGCTGAAAAGATGATATTTGGTGTGGCTGGGATTGATCCTGAAAGAAGAGCAGAGCTAATCAAGGTACTTGGTGTAGAGAGAACAGCATCACAACAGGAAATAAAGAAGGCTTATTACAAGTTAGCATTGAGGCTGCATCCTGACAAGAACCCTGGTGATGAGGAGGCTAAAGCAAACTTTCAGCAACTGCAAAATGTTATCTCGATTCTTGGGGATGAAGAAAAGCGAGTCATTTATGATCAGATTGGTTGTGTTGATGATGCTGACCTTGCCGGGGATGTTGTCCAGAATCTTCACAACTACTTTAGAACAATGTACAAGAAGGTTGTTTGCGTTGATCCTGATTTTGTTCTGATTTCTTGTCGCACGGTTCTTATTTGCATTTACAAGTCTGTGGACCCAAAAGAAAAACAAAATGCTTTTGAAATTGGCCAGAGCTATATAGATAAGGCTGTGTCACTGGAGGGACTATCTCCTCGGGTACCGCTATATAAAGTAACAGAAGGGAATGAACCATGCTTTTTCACAACATACTTTCCATGGGACCATGCTAAAGCTTCGGTTCAGGGGAACTCTTTCCAGAAAAAGGTGACATTATTCTTCGGGATTCACCATGCTGTAGAGGAAAAGTCTAATGGGCCAAGTCAAGGGGGACCAAGACAAAGAGCTGAAGCTTTCTCTGCCTTGTCTAATGCCTTTAATTCATCTTCTGATATGACATCCAGTATGTCACAGGATAGATTGAATGGGCTGAATCAAGGAGGACCAAGACAAAGAGCAGAAGCTTTGGCTGCTTTAAACTCTGCATTTAAATCATCATCCGGAACCAAAAGTTCTAGCCCTAAGACAACTGGAAGAAGTCAAGGATCACAAAGAGCAACATCAGTAGCTGCTCTCTCTCAAGTTCTTACTGCTGAGAAGAAGAAACAATCACCTGATTCTTCTCCTGTGCCAACCAGAAGTCCTGTTGTGGAAACTAGCACTTCCAGTGAGAAACATAGCTCTTATTGTCTAAGTTAA 1734 0.4464 MQDEIDFLLSQISKGSATAATLTTASTFSFFSSLLNTEPVEHSPCLSRSFSFAEQIKLKLLFSSSQVSSSTPAPPAAASIPTTAAPLSLLLSPFSSGSHIFSAPQPSSPPVNASSVIVILLRGSSCFPDEILERVIGMLKSRKDRSSVSLVCKEWYNAERWSRRNVFIELRLKRMTVTDESLKFLVRSFPNSKAISLQNCDGFSTDGLAAIAADCKLIDWRRDVAFAGYEVSIQMDVSAEKMIFGVAGIDPERRAELIKVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKANFQQLQNVISILGDEEKRVIYDQIGCVDDADLAGDVVQNLHNYFRTMYKKVVCVDPDFVLISCRTVLICIYKSVDPKEKQNAFEIGQSYIDKAVSLEGLSPRVPLYKVTEGNEPCFFTTYFPWDHAKASVQGNSFQKKVTLFFGIHHAVEEKSNGPSQGGPRQRAEAFSALSNAFNSSSDMTSSMSQDRLNGLNQGGPRQRAEALAALNSAFKSSSGTKSSSPKTTGRSQGSQRATSVAALSQVLTAEKKKQSPDSSPVPTRSPVVETSTSSEKHSSYCLS* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0974 577 SUPERFAMILY Chaperone J-domain 257 341 IPR036869 -
Amo20g0974 577 MobiDBLite consensus disorder prediction 508 577 - -
Amo20g0974 577 Gene3D - 121 163 - -
Amo20g0974 577 SMART dnaj_3 255 313 IPR001623 -
Amo20g0974 577 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 255 351 IPR042977 -
Amo20g0974 577 CDD DnaJ 259 310 IPR001623 -
Amo20g0974 577 Gene3D DnaJ domain 251 331 IPR036869 -
Amo20g0974 577 PRINTS DnaJ domain signature 258 276 IPR001623 -
Amo20g0974 577 PRINTS DnaJ domain signature 276 291 IPR001623 -
Amo20g0974 577 PRINTS DnaJ domain signature 313 332 IPR001623 -
Amo20g0974 577 PRINTS DnaJ domain signature 293 313 IPR001623 -
Amo20g0974 577 Pfam F-box 126 165 IPR041567 -
Amo20g0974 577 MobiDBLite consensus disorder prediction 472 490 - -
Amo20g0974 577 SUPERFAMILY F-box domain 125 159 IPR036047 GO:0005515
Amo20g0974 577 ProSiteProfiles dnaJ domain profile. 256 321 IPR001623 -
Amo20g0974 577 Pfam DnaJ domain 259 318 IPR001623 -
Amo20g0974 577 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 255 351 - -
Amo20g0974 577 Gene3D Severin 351 435 IPR029006 -
Amo20g0974 577 SUPERFAMILY Actin depolymerizing proteins 368 434 - -
Amo20g0974 577 MobiDBLite consensus disorder prediction 472 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0974 Amo-Chr20 16913588 16919689 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0974 259 318 C2H2 Transcription Factor Family AT1G74250 38.462 8.52e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0974 - - pvu:PHAVU_001G131700g 288.115