Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0968 ATGGAGTTTCTTGATTTCTTCATGGTAGCAACAAGTACCATAGGCTTCATCTTAGTATGCAAAAATGTCTTGTATTTTGTGAAGTGGGTATGGGGAATGTTCTTAAGGGCTCCAAAGAATCTAAAAGAGTATGGTTCATGGGCCATGATCACTGGATCCACCGATGGAATTGGCAAAGCCATGGCACATGAATTGGCATCTAAGGGTCTCAACCTTCTCTTGGTTAGTAGAAACCCTAAAAAGCTTGAAGCCACATCCAATGAAATAAGAGACAAAAATAGTGGCAATGTTGAAATAAAATGTTTAGCAATTGATTTTGCAAAAGAAAATGGAGAGGAAATTATGAAAAGGGTTGAGGAAGAAATTGAGGGTTTGGATGTGGGTATTCTTGTAAATTGTGCTGGGTGGACACATGCTTATGCTAGGTACTTTCATGAGGTTGATTATGAGATGATAAATGGTACCATAAAAGTTAATGTGGAAGGAACAATTTGGGTCACAAAGGCAGTGATTCCTAGTATGATCAAGAAGAAGAAAGGAGCAATCATAAACCTTGGATCTGGTTCTACTTTTCTTCTTCCATCATATCCCTTGTTTACCGTCTATGCTGCTACTAAACGATCTGTGGAAATGTTCTCGAGATGCATTAACTTGGAATACAGGCATAAAGGAATTGACATCCAGTGTCAGTATATAAAATCATGCACAAGATGGATTGGGTATGAAACTGTGGTGGTGCCTTACTTGCTACATTCTCTTCAGGCATTTACAGTGAGGGCAATTCCTGAGACATTTGTTGATTCCTATATGCTGCGTTACTTTCTCTATTGGCGCAAAAAAGGACTCTTCAAAGACGCTAAAATTAAAGCATTGGAAGCATCCAAGTCCTAA 891 0.3872 MEFLDFFMVATSTIGFILVCKNVLYFVKWVWGMFLRAPKNLKEYGSWAMITGSTDGIGKAMAHELASKGLNLLLVSRNPKKLEATSNEIRDKNSGNVEIKCLAIDFAKENGEEIMKRVEEEIEGLDVGILVNCAGWTHAYARYFHEVDYEMINGTIKVNVEGTIWVTKAVIPSMIKKKKGAIINLGSGSTFLLPSYPLFTVYAATKRSVEMFSRCINLEYRHKGIDIQCQYIKSCTRWIGYETVVVPYLLHSLQAFTVRAIPETFVDSYMLRYFLYWRKKGLFKDAKIKALEASKS* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0968 296 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 2 230 - -
Amo20g0968 296 Gene3D - 41 233 - -
Amo20g0968 296 PANTHER RH59310P 2 230 - -
Amo20g0968 296 CDD 17beta-HSD1_like_SDR_c 45 264 - -
Amo20g0968 296 PIRSF 11-beta-HSD1 1 232 - -
Amo20g0968 296 PIRSF 11-beta-HSD1 230 284 - -
Amo20g0968 296 PANTHER RH59310P 231 287 - -
Amo20g0968 296 PRINTS Glucose/ribitol dehydrogenase family signature 174 190 IPR002347 -
Amo20g0968 296 PRINTS Glucose/ribitol dehydrogenase family signature 125 136 IPR002347 -
Amo20g0968 296 PRINTS Glucose/ribitol dehydrogenase family signature 202 221 IPR002347 -
Amo20g0968 296 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Amo20g0968 296 Pfam short chain dehydrogenase 47 229 IPR002347 -
Amo20g0968 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 229 IPR036291 -
Amo20g0968 296 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 231 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0968 Amo-Chr20 16490448 16493625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0968 14 286 Lipid Metabolism Gene Families AT1G67730 47.475 1.11e-94 281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0968 K10251 - gmx:100816067 406.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0968 20 16490448 16493625 Amo20g0968 20 16490448 16493625 ECH
Amo20g0968 20 16490448 16493625 Amo10g0556 10 6045798 6051803 hybridization
Amo13g5073 13 150153536 150156109 Amo20g0968 20 16490448 16493625 PCT