Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0959 ATGGACAATAATAATGGTTGCTTCTCTTCACCAAGACGTGATGCTTTTCCAGCAGGTCTAAGAGTCCTTGTTGTTGATGATGACCCAACATGGCTTAGGATCCTTGAAAAGATGCTCAAGAAGTGTTCCTATGAAGTGACAACGTGTTGTTTGGCGAGGCATGCTCTACACTTGCTTCGCGAAAGGAAAGACGGGTATGATATAGTGATCAGCGATGTGAACATGCCGGACATGGATGGATTCAAACTTCTAGAGCATGTTGGACTTGAGATGGATCTTCCTGTGATTATGATGTCTGTTGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACACGGAGCATGCGATTATCTGCTTAAGCCTATAAGGATGAAGGAACTGCGAAACATATGGCAGCATGTCTTTAGGAAAAGGATACACGAGGCGAGAGAATTCGAGAGTTTTGAAGGTTTCGAGAGCATTCACCTGATGAGAAACGGATTGGAGCAATGCGATGATGGGAACCTGTTTGCCCTTGAAGACATGACCTCAACTAAGAAAAGAAAAGATGCAGATAACAAACACGATGACAGAGAATTGATAGATCCATCATCCACAAAGAAAGCTAGAGTAGTTTGGTCTGTGGATCTTCACCAGAAGTTTGTTAAAGCAGTGAATCAAATTGGATTTGATAAAGTTGGTCCAAAGAAAATACTAGATCTCATGAATGTTCCTTGGCTGACTAGAGAAAATGTTGCAAGCCACTTGCAGAAGTATCGCCTTTACCTAAGCCGGCTTCAGAAAGAGAACGATCTGAAGTCTCACTCAATCGGAATGAACTCGGATTTAGCCTCAACAGATCTAGGGAGTCTTGTTGGAGTTCAGAACTCAGGGAGCAAGAAACAAAATGACGTTTCAATTGACAGCTGCAGTTATTCAGAAGGAGCACTGCAACTTCAGAACATGGAAACCAAAACTCATGAAGGTAGCAGTGATCCAAACGGAACTATTTCTCCGCCTGCCACCACAGAAAAAGGAAGAACTATGATCAGAAACTTTGTTTCCGAGAAAAAGATGAGAAAGAACCAACCTTTTGACTCTCTTGAGCCGGAAGGAAACCACACAGCAGTAATTGATTGCTCCATTCCAACACAATTCTCTTGGAATGAAGTTCCAGAAATTCAACTCAAAGATCACAAGCCACTTGTTCAGTTAGAGGGTAACTTAAGCCACAAGTTTCCAGTAACAGGTAAGAAGCACCAAATCCAAGTTGATCATCAATCACCATCAATTGGTTCGATTAGTTCTCCATCTTTGACAGGGGAGGAGGTCACGGCATGCATCAAAACAAAACCTTTGTGTGCAGATTACAAGTGTGAATATAAGAGTTCTGTGAGTTCGATAGGATCGGCCGTTGACAACAACACGTTCCCTATCGAACCAGGAAGCCTTATGATGAATGATCCATCAACAGCACCAATTTCAACTACAAATTTGGGATTGAAAACACAAGCATCTAACCTCAACAGCATTTCGGATATGGAATTTTGCCAGAGAAACCTACTTTTGGATGCAGTTTCGCTACCCTTGGACGATGATCTGCATTTTAATTGGCTACATGGGGAATGCTCTAACATCAACTTCAGCCTGCAGAACATAGGGTATTATGATCCAGGGCTTATTGCAGAAATTCCAACTCATTACTATGATTCAGCAGCAGATTATTCAGTCATAGATCAAGGTCTATTCATATCATGA 1740 0.4195 MDNNNGCFSSPRRDAFPAGLRVLVVDDDPTWLRILEKMLKKCSYEVTTCCLARHALHLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFESFEGFESIHLMRNGLEQCDDGNLFALEDMTSTKKRKDADNKHDDRELIDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDLKSHSIGMNSDLASTDLGSLVGVQNSGSKKQNDVSIDSCSYSEGALQLQNMETKTHEGSSDPNGTISPPATTEKGRTMIRNFVSEKKMRKNQPFDSLEPEGNHTAVIDCSIPTQFSWNEVPEIQLKDHKPLVQLEGNLSHKFPVTGKKHQIQVDHQSPSIGSISSPSLTGEEVTACIKTKPLCADYKCEYKSSVSSIGSAVDNNTFPIEPGSLMMNDPSTAPISTTNLGLKTQASNLNSISDMEFCQRNLLLDAVSLPLDDDLHFNWLHGECSNINFSLQNIGYYDPGLIAEIPTHYYDSAADYSVIDQGLFIS* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0959 579 MobiDBLite consensus disorder prediction 318 337 - -
Amo20g0959 579 Gene3D - 20 201 - -
Amo20g0959 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 556 IPR045279 GO:0009736
Amo20g0959 579 Gene3D - 202 261 - -
Amo20g0959 579 Pfam Response regulator receiver domain 22 131 IPR001789 GO:0000160
Amo20g0959 579 SMART REC_2 20 132 IPR001789 GO:0000160
Amo20g0959 579 CDD REC_typeB_ARR-like 22 136 - -
Amo20g0959 579 SUPERFAMILY CheY-like 19 148 IPR011006 -
Amo20g0959 579 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
Amo20g0959 579 SUPERFAMILY Homeodomain-like 200 259 IPR009057 -
Amo20g0959 579 Pfam Myb-like DNA-binding domain 204 254 IPR001005 -
Amo20g0959 579 ProSiteProfiles Response regulatory domain profile. 21 136 IPR001789 GO:0000160
Amo20g0959 579 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0959 Amo-Chr20 16178045 16181743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0959 14 310 Response Regulator Gene Family AT2G25180 50.667 2.25e-82 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Amo20g0959 Response_reg 3e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0959 - K14491 gmx:100797421 781.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0959 20 16178045 16181743 Amo20g0959 20 16178045 16181743 ECH
Amo20g0959 20 16178045 16181743 Amo10g0529 10 5614364 5617749 hybridization
Amo20g0959 20 16178045 16181743 Amo13g5582 13 157544652 157547421 PCT
Amo13g5582 13 157544652 157547421 Amo20g0959 20 16178045 16181743 PCT