Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0955 ATGTCAAACATGCTTAAGCGCAAATTAGAGGAGGAGCAACCTATCATGGATAATAATAATAATAATAATAATCCAGAGTTGTTGCTTACTCTGAGCCTCAACCTGGAAAGGGTTGATGAACCATCTTCCAATATGGAAAATCGCCCTAAGCAGCAACGATTATTTCCTTGCAAATTCTGTTACAAGAAGTTTGCGAGTTCTCAAGCTTTGGGAGGACATCAAAATGCTCACAAGCGCGAGAGGATGCTCTCAAGAATGAACAAAGTGTTTAACATGGGAGCCATTGACCTTGGTCCTCGTCACTTCTGTCCTTACTCAAACATGTCAAATCATCTTATTCCCTTTCGTGGGTCATTTCCTGTTTATCATCAAGGTGCACACATGCACCACATGGTTCATATGCCTTCTTCCACCTTGACCATGCCTTTTCCTCGTTTTGGATCTAACTTTGGAAACTGA 459 0.4139 MSNMLKRKLEEEQPIMDNNNNNNNPELLLTLSLNLERVDEPSSNMENRPKQQRLFPCKFCYKKFASSQALGGHQNAHKRERMLSRMNKVFNMGAIDLGPRHFCPYSNMSNHLIPFRGSFPVYHQGAHMHHMVHMPSSTLTMPFPRFGSNFGN* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0955 152 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Amo20g0955 152 Pfam C2H2-type zinc finger 55 79 - -
Amo20g0955 152 Gene3D Classic Zinc Finger 39 92 - -
Amo20g0955 152 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 142 IPR044246 GO:0009788
Amo20g0955 152 SUPERFAMILY beta-beta-alpha zinc fingers 52 82 IPR036236 -
Amo20g0955 152 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0955 Amo-Chr20 16054570 16055028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0955 51 151 C2H2 Transcription Factor Family AT5G10970 38.614 2.71e-16 72.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo20g0955 zf-C2H2_6 1.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0955 - - aip:107620206 280.026