Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0934 ATGGAACGCTCAAATCCGGAAGGGAAACCAAATAGCACAGTGATCAATGCTAGTGAAGGCAATGATGAATTGAATGACGATGGCGTTGTTAATCAAGAGGGTTCCTTGGTCGACGAAATCACCGACGTCATGGTGATGAGAAATGATGAGTTGGATTTAAGACACGAGTTGCCGGATCATAGTGGGCTCAGTGAAGCGGAAATTCCAGTCATAGGAATGAGTTTTGATTCGCTGCCTTTGGCACAGGAGTTTTATGCAAATTATGCAAAGAAATTGGGGTTTGTAACTAAAGTCAGGAATACGAACTTTGACAAGACGCGGAAGGACGCAAAGATACCCATTAATCAATCTCTTCACTGCACTCGAGAGGGTTATCGAGAATCTCATGTTAAGGTAGCAACTCGGTCAAACAGAATAACAGCCACGAGATGCAAAGCAAGAATGGTAGAATTGAGGCATTCTCATCCCTGTTCAGCTGAGAAAGCTGTCCACTATCATGAGTACCGGGAGCTGACCATGCATGCCAAGTACGTCATTACAGATAACGACGAGGCTGGCATAAGACCCAACAAGACGTATCTAGCACTGGCAAACGAAGTTGATCTTTATGCGAATCGACGTAAGTGGTTGCCAATATTCTTCAAGACTGAATTTTGGGCCGGCATGAGGAGTACACAACGGAGTGAACAGCATGCACGCATTCTATGGTGGATACCTGCATTGCAAGAGTGGGAGCAAAAGGAACTTGAAGATGATGCTGCGGACTCGAAAGGAGCCATCCCATGTATAGGGAGCACAGGCATTGAGCGACAGTTTCAACAGGAATATACGAGTAATATGTTCCGGACCCTTCAGTTGGAGTTTGACCCCTTGAGTCAAAAGAGTCGGTGCGAGTGCAACAAATTTGAATCCGTTGGTATATTGTGTTACCACATCTTTGCGGTGTGGTCATACTATAGAGTTGACACAGTACCGAGCTGCTATGTTCTTCCTCGATGGAGTAAGAATGTCATCCGCAAGTACACTTACATTAAGAGTATCCATGACGTGGCTCGGAGTAATGAAAGCCACAATATGTTCAGGCAACTGTGTTCGGAGTTCTATAACGTTGCTCAGGAGTTTGTTGCTTGTGAAGAAGAAGCAACCATCTTGCTGACTGATCACCGTGCCAGCATGCGTTTCACTACTCTTGATGGGACTCAGAATACGATTCCCACACAGAGCACATGCGGACGACCGAAGAGTAAGAGACTTGGAGCAGAGTTGGACAAGTCAATTAAGAAGTCAATGGAAAAAAGGAAGAGGAAATCACAACCAGATGTTGTTGACCTTCAGACAGATAATGATCGTCATGGTTCTGTAAACAACAGACTTGGGGATTCTACTATATGGAATTCATCAGATGGTGGCAGATTCATGGACCTGTTGAACTCTTTTAGGCATATATAG 1449 0.4472 MERSNPEGKPNSTVINASEGNDELNDDGVVNQEGSLVDEITDVMVMRNDELDLRHELPDHSGLSEAEIPVIGMSFDSLPLAQEFYANYAKKLGFVTKVRNTNFDKTRKDAKIPINQSLHCTREGYRESHVKVATRSNRITATRCKARMVELRHSHPCSAEKAVHYHEYRELTMHAKYVITDNDEAGIRPNKTYLALANEVDLYANRRKWLPIFFKTEFWAGMRSTQRSEQHARILWWIPALQEWEQKELEDDAADSKGAIPCIGSTGIERQFQQEYTSNMFRTLQLEFDPLSQKSRCECNKFESVGILCYHIFAVWSYYRVDTVPSCYVLPRWSKNVIRKYTYIKSIHDVARSNESHNMFRQLCSEFYNVAQEFVACEEEATILLTDHRASMRFTTLDGTQNTIPTQSTCGRPKSKRLGAELDKSIKKSMEKRKRKSQPDVVDLQTDNDRHGSVNNRLGDSTIWNSSDGGRFMDLLNSFRHI* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0934 482 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 202 288 IPR031052 GO:0006355
Amo20g0934 482 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 59 150 IPR031052 GO:0006355
Amo20g0934 482 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 292 412 IPR031052 GO:0006355
Amo20g0934 482 MobiDBLite consensus disorder prediction 427 447 - -
Amo20g0934 482 PANTHER OS03G0843700 PROTEIN 202 288 - -
Amo20g0934 482 ProSiteProfiles Zinc finger SWIM-type profile. 282 320 IPR007527 GO:0008270
Amo20g0934 482 PANTHER OS03G0843700 PROTEIN 59 150 - -
Amo20g0934 482 PANTHER OS03G0843700 PROTEIN 292 412 - -
Amo20g0934 482 Pfam FAR1 DNA-binding domain 83 149 IPR004330 -
Amo20g0934 482 MobiDBLite consensus disorder prediction 427 454 - -
Amo20g0934 482 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0934 Amo-Chr20 15563077 15566732 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo20g0934 FAR1 4.2e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0934 - - ahf:112775660 442.58