Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0927 ATGGAAACGAGTCCCGGCCGTACGATTAAGCTCCTCTGCAGCTACGGCGGCAAGAACCTCCCACGCGCTACCGACGGCGGGATCCGTTTCATCGGTGGCCACACTAGAGTCACCGTGGATCGTTCCATTTGCTTCTCAGATCCATTTTTTAACTTGTTGGTAAAGGTAGGAGCGTTGTGCGGTTCGTCTGTGACGTTCTGGTGTCAATTGCCGAACGAAGACTTAGAAACCTTGATCTCCCTCACCAACGACGAAGATCTGACGAACATAAGCAAAGAATATGACCGAGCTTCGTCGAAACTACCTCATCCGTTGAATACCAGAGCC 327 0.5138 METSPGRTIKLLCSYGGKNLPRATDGGIRFIGGHTRVTVDRSICFSDPFFNLLVKVGALCGSSVTFWCQLPNEDLETLISLTNDEDLTNISKEYDRASSKLPHPLNTRA 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0927 109 Pfam PB1 domain 28 100 IPR000270 GO:0005515
Amo20g0927 109 PANTHER PB1 DOMAIN PROTEIN 6 101 - -
Amo20g0927 109 PANTHER OS05G0427100 PROTEIN-RELATED 6 101 - -
Amo20g0927 109 SUPERFAMILY CAD & PB1 domains 26 99 - -
Amo20g0927 109 SMART PB1_new 23 105 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0927 Amo-Chr20 15422956 15423368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0927 9 100 MAP Kinase Kinase Kinase AT1G04700 43.011 2.83e-18 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0927 - - aip:107611558 190.274