Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0896 GAAGTGGAGGTTGCGCCACCTAAGGCCGTTGAAGTCCGTTTGAAGATTCTCTACACCTCACTTTGCCACACCGATGTTTACTTCTGGGAAGCCAAGGGCCAGACTCCATTATTTCCTCGGATATTTGGTCATGAAGCTGGAGGGATTGTGGAGAGTGTAGGAGAGGGAGTGACTCATCTGAAACCAGGTGACCATGCCCTCACTGCAAGTCGGAGGAGAGCAACATGTGTGACCTTCTCAGGATCAACACCGACAGGGGGAAAACCAATTTACCACTTTGTTGGGACCTCCACATTCAGTGAATACACTGTGGTTCGTGCTGGATGTGTTGCATCTCTCAACCCTGAAGCACCACTTGACAAAGTTTGTGTTCTCAGCTGTGGAATCTGCACAGGTCTTGGTGCCACTATCAATGTTGCAAAACCAAAACCTGGTTCTTCTGTTGGTCTTGCTTCTGCTGAAGGGGCAAGGATTTCTGGTGCATCAAGAATCATTGGGGTTGATTTAGTTTCCAGCCGATTCGAATTAGCCAAGAAGTTTGGGGTTAATGAATTTGTGAACCCAAAAGATCATAACAAACCTGTACAAGAGGTAATTGCTGAAATGACCAATGGAGGTGTGGATCGTTCTGTTGAATGTACTGGCAGCATCCAAGCTATGATCTCAGCATTTGAATGTGTCCATGATGGTTGGGGTGTTGCTGTTCTTGTTGGTGTGCCAAGCAAAGACGATGCTTTCAAAACTCATCCTACGAACTTCTTGAATGAGAGGACTCTCAAGGGTACCTTCTATGGTAACTACAAACCCCGAACCGATCTTCCTAATGTTGTGGAGAAGTACATGAGAGGGGAGTTGGAACTTGAGAAATTCATCACTCACACTGTTCCGTTCTCAGAGATTAACAAGGCTTTTGATTTGATGCTGAAAGGAGAGTCCATCAGGTGCATCATTCGGATGGACGAATAA 966 0.4607 EVEVAPPKAVEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALTASRRRATCVTFSGSTPTGGKPIYHFVGTSTFSEYTVVRAGCVASLNPEAPLDKVCVLSCGICTGLGATINVAKPKPGSSVGLASAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHNKPVQEVIAEMTNGGVDRSVECTGSIQAMISAFECVHDGWGVAVLVGVPSKDDAFKTHPTNFLNERTLKGTFYGNYKPRTDLPNVVEKYMRGELELEKFITHTVPFSEINKAFDLMLKGESIRCIIRMDE* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0896 321 Pfam Zinc-binding dehydrogenase 148 277 IPR013149 -
Amo20g0896 321 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 43 57 IPR002328 GO:0008270|GO:0016491
Amo20g0896 321 PANTHER ALCOHOL DEHYDROGENASE-RELATED 86 319 - -
Amo20g0896 321 SUPERFAMILY GroES-like 269 318 IPR011032 -
Amo20g0896 321 PANTHER ALCOHOL DEHYDROGENASE-RELATED 1 69 - -
Amo20g0896 321 PANTHER ALCOHOL DEHYDROGENASE 86 319 - -
Amo20g0896 321 Gene3D - 1 311 - -
Amo20g0896 321 SUPERFAMILY GroES-like 1 135 IPR011032 -
Amo20g0896 321 Gene3D - 132 262 - -
Amo20g0896 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 118 284 IPR036291 -
Amo20g0896 321 PANTHER ALCOHOL DEHYDROGENASE 1 69 - -
Amo20g0896 321 Pfam Alcohol dehydrogenase GroES-like domain 11 108 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0896 Amo-Chr20 14879221 14881335 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0896 11 287 Monolignol Biosynthesis Gene Families AT4G37990 23.906 1.58e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0896 K18857 - gmx:100801918 556.214