Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0860 ATGGCTGCAGGTTCCACTGCTGGTTCTCACTCCCGGAAAGGGCTCGGATTCATGCGCTATGATGACTCAGATGAGGAAAATACAGACTACAATCAGCAACAGTGGCAGCACAATGTTGAAGCTTTCTCTTTAGCTGGAAGTGTTGCTAGTAAGGATTCTGAAGTAGAAATTGGTTTCTTAAGAAATACAGAGAAACACATAGAAAGAAAAGAAAAGAAAGGACTAATAAGCAATGATCAAGAAGATGAAGATTACATTTTGGCTGAAGCAAGGCAACCATTGTGGCGAAAAGTGCCGGTACCTTCAAGCCTAATCAATCCATACCGGATAGTCATTGTCATGCGCCTCGTCGTGCTGGCATTCTTTTTTCGCTTCCGGATCCTAAATCCAGTCCATGATGCATTTCCACTCTGGTTGGTCTCAGTAATTTGTGAAATATGGCTAGCATTGTCCTGGCTAGTTGATCAGCTACCAAAATGGTTCCCCATCACACGCGAAACCAGCCTCGAGCGCTTGTCCTTGCGCTTCGAGCAAGAAGGCAGGCAAAACAAACTATCCCCTGTTGATGTTTTTGTGACAACTGCAGACCCTTTTAAAGAACCACCAATCATAACAGCAAACACTGTCTTATCAGTACTTTCTGTTGATTATCCAGTAGAAAAGGTTAACTGCTATGTCTCGGATGACAGTGCTTCAATGCTTCTCTATGATACTTTGTATGAAACTTCAGAGTTTGCAAGAATTTGGATCCCTTTTGTGAATAAGTACAGCATTGAGCCAAGAGCACCTGAATTCTATTTCTCTCAGAAGGTTGATTACTTGAAAGACAAGGTTCATCCTACATTTGTAAGGGACCGCAGGGCGATGAAGAGAGAGTATGAAGAGTTTAAGGTGAGAATCAATGTGTTGATTTCAAAGGCTCAGAAGAAACCAGAAGAGGGTTGGGTGATGAAAGATGGAACACCTTGGCCTGGGAACAACACTGAAGATCATCCAGGGATGATTCAGGTGTGTTTGGGAAGTGCTGGTACACTGGACATGGATGGCAAACAACTGCCACGGCTTGTGTATGTTTCGAGGGAGAAGCGCCCCGGCTATCGACACCACGAGAAAGCTGGTGCTATGAATGCTTTGGTTCGAGTTTCTGCTGTTCTTAGCAATGCTCCTTTTGTGTTGAACTTGGATTGTGACCAGTATATCAATAATAGCAAGACTATAAGGGAGGCTATGTGCTTCTTAATGGATCCTCAGCTTGGAAAGAGGATTTGTTTTGTCCAATTTCCAAGAAGGTTCGATGGCATCGATAACAATGATCGATATGCTAATCGCAATACCGTGTTCTATGATATCGTGATGAAAGGACTTGATGGGATTCAAGGCCCAGTGTATGTTGGCACTGGTTGTGTTTTCAATAGGCAGGCAATATATGGCAATAAACCGCCATCTGATAAAAAGCCGAAGACAAGCCAGTCTTCATGCTGCTGCTGCTGCTGTTCTGGTGATGATTCTGGGTCCACATTTGATCTTGAAGAGATTGATGAAGGACTTGAAGGGTTTGAAGAGAAAGAGGAAACATCCTTCATTTCAATGAAAAACTTTGAGAAGCAATATGGAATGTCACCAGTTTTGATTGCTTCTGTTTTGATGGAAGATGGTGGACTTCCAAAAGTGACCAATACACAGTTGCTGATTAAGGAAGCAATTCATGTTATTAGCTGTGGTTATGAAGAGAAAACTGAATGGGGCAAAGAGATTGGGTGGCTTTATGGCTCAGTGACAGAAGATATCTTAACAGGATTTAACATGCATTGTAGAGGGTGGAAATCAGTGTACTGCATGCCAAAGAGAGATGCTTTTAAAGGATCTGCTCCTATAAATCTATCTGATAGATTACACCAAGTTCTGAAATGGGCTCTTGGTTCAACTGAGATTTTCTTTAGTGGCTATTGCCCATTGTGGTATGGTTATACTGGTAAACTAAAATTGCTACAGAGGTTGGCTTACACTAATACTATTGTTTATCCTTTCACTTCCATCCCTCTCTTGGTGTACTGCACGATTCCGGCCGTCTGTCTTCTGACTGGAAAATTCATCGTCCCCGCGTTAACAAATGTTGCTAGCATTTGGCTAATGGCTCTGTTCACCTCCATGATCTTAACGTGCGTGCTAGAGCTCCGGTGGAGTGGGGTAAACATTCAGGACTGGTGGCGCAACGAGCAATTCTGGGTGATCGGCAGCGTCTCCTCGCACCTCTTTGCCGTGTTCCAAGGTCTCCTCAAAGTTGGTGGAGTACACTCTAACTTCACAATCAGAGCAAAATCCACAGATAACAACAGTGTATCCAATCAACTCTATCTCTTCAAATGGACAACTCTTATGATACCACCAACAAGTCTTGTTATCTTGAACATGGTTGGGATTGTGGCCGGAATATCTGATGCCATTAACAATGGATATAACTCATGGGGACCTTTGTTTGGGAAGCTTTTCTTTTCTTTTTGGGTCATTATTCATCTATATCCTTTCCTTAAAGGTCTAATGGGAAGGCAGAACAGAACACCTACCATTGTTGTCCTCTGGTCAATACTTTTAGCATTGGTTTTCTCAATGATTTGGGTGAGAATTGATGTGTTCTTGCCCAAGAAAACAGGTCCAGTTCTAGTACAATGTGGGTTAGAATGCTAA 2685 0.4272 MAAGSTAGSHSRKGLGFMRYDDSDEENTDYNQQQWQHNVEAFSLAGSVASKDSEVEIGFLRNTEKHIERKEKKGLISNDQEDEDYILAEARQPLWRKVPVPSSLINPYRIVIVMRLVVLAFFFRFRILNPVHDAFPLWLVSVICEIWLALSWLVDQLPKWFPITRETSLERLSLRFEQEGRQNKLSPVDVFVTTADPFKEPPIITANTVLSVLSVDYPVEKVNCYVSDDSASMLLYDTLYETSEFARIWIPFVNKYSIEPRAPEFYFSQKVDYLKDKVHPTFVRDRRAMKREYEEFKVRINVLISKAQKKPEEGWVMKDGTPWPGNNTEDHPGMIQVCLGSAGTLDMDGKQLPRLVYVSREKRPGYRHHEKAGAMNALVRVSAVLSNAPFVLNLDCDQYINNSKTIREAMCFLMDPQLGKRICFVQFPRRFDGIDNNDRYANRNTVFYDIVMKGLDGIQGPVYVGTGCVFNRQAIYGNKPPSDKKPKTSQSSCCCCCCSGDDSGSTFDLEEIDEGLEGFEEKEETSFISMKNFEKQYGMSPVLIASVLMEDGGLPKVTNTQLLIKEAIHVISCGYEEKTEWGKEIGWLYGSVTEDILTGFNMHCRGWKSVYCMPKRDAFKGSAPINLSDRLHQVLKWALGSTEIFFSGYCPLWYGYTGKLKLLQRLAYTNTIVYPFTSIPLLVYCTIPAVCLLTGKFIVPALTNVASIWLMALFTSMILTCVLELRWSGVNIQDWWRNEQFWVIGSVSSHLFAVFQGLLKVGGVHSNFTIRAKSTDNNSVSNQLYLFKWTTLMIPPTSLVILNMVGIVAGISDAINNGYNSWGPLFGKLFFSFWVIIHLYPFLKGLMGRQNRTPTIVVLWSILLALVFSMIWVRIDVFLPKKTGPVLVQCGLEC* 895
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0860 894 Pfam Cellulose synthase 188 886 IPR005150 GO:0016020|GO:0016760|GO:0030244
Amo20g0860 894 PANTHER CELLULOSE SYNTHASE-LIKE PROTEIN 7 894 - -
Amo20g0860 894 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 7 894 - -
Amo20g0860 894 MobiDBLite consensus disorder prediction 1 31 - -
Amo20g0860 894 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 328 478 IPR029044 -
Amo20g0860 894 SUPERFAMILY Nucleotide-diphospho-sugar transferases 199 699 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0860 Amo-Chr20 13504143 13509123 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0860 79 894 Cell Wall Biosynthesis AT5G17420 68.408 0.0 1213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0860 K10999 - gmx:100777278 1443.33