Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0824 ATGAAGACTATGATGATGGTGATGATTATGGTGTCTATAACCATGGCAGCACCTTCACCTTCACCTTCTCCTTCTTCTCCTTCAACATGCCCCATCGACTTTAGCTATGTTAAGAGAGTTCCATGGAACCCTTCAGCATGTGAGAATTTCCACTCTTTATCATCGAACTTGAGCAACTGTTGCACCTCGCTCTTATCTCTAATCGGAATAGGGTTCGCGCAGTACCTTAAAGCAACTACAAATTTCAACCTCCCAAACCTTGAAACCTCAACCTCATGCGTCCATGATTTCCAGTCTCAGCTCAATTCCTTATCTCTCCAAAACAACCTCGTTGACTTGTGCTTTGACCCTCACCAGTTCGTCATGTCCCGAAACGTCTGCGCAGGAATTGAAACCCTAAAAGATTGGGACAAGAAGCTTGGTCAAATCACGCCTCTTGATACTAGTTGCAAACAAGACCTCACTGATCTTTCGCTATGTGATGTGTGTCTTACTGCGGGGTTTCAGGTGCAGCATAAACTTGTCTCCATTGATGGTAATGCTTCTCACTCTGAAAATTGTTTCAAATTTACTATTCTATATGCTGCTGCGTTTGTGAATCAGTATGGACCTGAAAGCAATGGTGCCATGAGTTGCATCTTTGGTATGTCACTTTACACACAGGGTGGTGGTTCTGGTGGGAAAAGTCACCAGGGTTTGGTTTTTGGGTTAACTGGTGCTGGTGTTGCTTTGTTAGTTATGTCTTGTTTGTTAGGGGTTTATGTTTGGTATGATAGGAAGGTTAGGAGGAAGAAGCTTAATGATGATGAATTTGACTTTGATCCTGAGGAACAAGGGTCTAGGCGTAGGTTGAGGCCGAATACAGGGTCTATTTGGTTCAAGATTGATGAGCTTGAGAAGGCTACTGATAATTTCTCAACCAAGAATTTCATTGGCAGGGGTGGATTTGGGCTTGTTTTCAAGGGGGTTTTGTCCGATGGTTCCGTCGTGGCAGTTAAGAGGATCTTGGAATCTGATTTTCAAGGGGATGTGGAGTTTTGTAATGAGGTGGAGATTATTAGCAACCTGAAGCACCGGAATCTGGTGCCTCTTCGAGGCTGTTGTGTAGTGGATGATGATGATGAAAAATTTAATGACAGGGGAAGCCAGAGGTTTTTGGTTTATGATTACATGCCGAATGGAAACCTTGAAGACCATCTGTTTCTGGTGAGTGAGCAGCAAAAGTTGAAGAAATCGCTGACTTGGCCTCAAAGGAAGAGCATAATCTTGGATGTGGCAAAGGGGCTGGCTTATCTTCACTATGGAGTCAAGCCTGCAATTTTTCATAGGGATATAAAAGCAACCAACATATTACTTGATGAAGACATGAGAGCCAGAGTTGCGGATTTCGGGCTTGCTAAACAAAGCAGGGAAGGCCAATCTCATCTCACTACAAGAGTAGCTGGAACTCATGGATATCTAGCTCCGGAATATGCTCTTTACGGTCAGCTTACAGAGAAAAGTGATGTGTATAGTTTTGGGGTTGTTGTTTTGGAGATAATGTGTGGGAGGAGAGCCCTTGACTTGTCTTCAGCAGGATCGCTAAAGGCATTCTTGATCACGGATTGGGCTTGGTCGTTGGTGAAATCAGGGAACATAGAAGAGGCATTGGATGCTTCTTTGTTGAAGGATGACAGCTTTGGAAGTTCAAATCCAAAGAGCATAATGGAAAGGTTTTTACTTGTGGGAATTCTATGCTCACATGTGATGGTTGCTCTGAGGCCAACAATTTCTGATGCATTGAAGATGCTGGAAGGTGATATTGAGGTTCCTCAAATCCCGGATCGGCCAATGCCGCTCGGACACCCTGCTACGTTTTACGGCGATGGCGGCAGTACTTTCAGCATATCTCCGGCCTTAAGCGGCCCCAAGTTGCAAACTGGAGACATGCTCAGGTCCATTGGTAAGAGCTGA 1953 0.445 MKTMMMVMIMVSITMAAPSPSPSPSSPSTCPIDFSYVKRVPWNPSACENFHSLSSNLSNCCTSLLSLIGIGFAQYLKATTNFNLPNLETSTSCVHDFQSQLNSLSLQNNLVDLCFDPHQFVMSRNVCAGIETLKDWDKKLGQITPLDTSCKQDLTDLSLCDVCLTAGFQVQHKLVSIDGNASHSENCFKFTILYAAAFVNQYGPESNGAMSCIFGMSLYTQGGGSGGKSHQGLVFGLTGAGVALLVMSCLLGVYVWYDRKVRRKKLNDDEFDFDPEEQGSRRRLRPNTGSIWFKIDELEKATDNFSTKNFIGRGGFGLVFKGVLSDGSVVAVKRILESDFQGDVEFCNEVEIISNLKHRNLVPLRGCCVVDDDDEKFNDRGSQRFLVYDYMPNGNLEDHLFLVSEQQKLKKSLTWPQRKSIILDVAKGLAYLHYGVKPAIFHRDIKATNILLDEDMRARVADFGLAKQSREGQSHLTTRVAGTHGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGRRALDLSSAGSLKAFLITDWAWSLVKSGNIEEALDASLLKDDSFGSSNPKSIMERFLLVGILCSHVMVALRPTISDALKMLEGDIEVPQIPDRPMPLGHPATFYGDGGSTFSISPALSGPKLQTGDMLRSIGKS* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0824 650 CDD STKc_IRAK 311 599 - -
Amo20g0824 650 ProSiteProfiles Protein kinase domain profile. 305 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0824 650 Pfam SPARK 25 188 IPR043891 -
Amo20g0824 650 Gene3D Phosphorylase Kinase; domain 1 275 390 - -
Amo20g0824 650 Pfam Protein kinase domain 306 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0824 650 Gene3D Transferase(Phosphotransferase) domain 1 391 605 - -
Amo20g0824 650 PANTHER RECEPTOR-LIKE PROTEIN KINASE-RELATED 7 644 - -
Amo20g0824 650 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 7 644 - -
Amo20g0824 650 SMART serkin_6 305 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0824 650 SUPERFAMILY Protein kinase-like (PK-like) 285 598 IPR011009 -
Amo20g0824 650 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Amo20g0824 650 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0824 Amo-Chr20 12665683 12668414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0824 26 645 Receptor kinase-like Gene Family AT1G11050 64.090 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Amo20g0824 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0824 - - gmx:100806560 996.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0824 20 12665683 12668414 Amo20g0824 20 12665683 12668414 ECH
Amo20g0824 20 12665683 12668414 Amo10g0458 10 4566832 4567599 hybridization