LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo20g0817	ATGAACCTCTTTCTCCTCCAAGTGCCCATGTTCTCCCTGTTCCTCCGCCGCCATTTCTTCTCCACCAAGCTCCCTACCCTCTCCAAGGTCCCCACGCGCCACAGAACCTTCGCTCTCCGTGAAGCTCAGAACGCCCTCACTGACTACCTTCATGCCACCAGGTGCTTGCCTTTTACCTATGCAGAGCACATTGGCAACAAAGCCCTTTGTTCCCTCATGAGTCTCATTGCAAAGGTAGATTTTTCAGCCCCTACTTTCTCTAAAAGCTTTCAGAAGTTCCTTAGGTACCACCCTATTAATGAATTCGAGGTCTTCTTCGAGAGCATAGGGATAGAGTACAGTATGGTGTCTGAGTTGTTGCCTCGTGACAAGGTGTTCTTTTCTGAAGATGTGATCCTCTTTGATGCTGCTTGCACTCTTTGTGATTTCGGGTTTCCCTGGGAGAAGTTGGGGTTGTTGTATATGGCAGAAAGTTCAATATTTGGCATGAATGCTGAACAGTTGAATAGAAGGCTTTGYGGATTTAAAGGGTTTGGTTTTGGTAGCGTTGAGGTTATTGGTATATGTTTGGCTTTCCCTTTTGTTTTACTTGAGGAAGGCCAAGTGAGAGCTGGAAGAATTGAGCGACTGTTAAGTGATCTGAAATTGATATTTTTGGATTTTGGGTTGGGAAGGTTTGTTGAGGGAGATGTGGATTCTTGGCATGAGATGTGTAGAAAATTAAGGGTGTTTTATGATTTAGATAGTCAGAAAGGGGAGTTAGGCGAACTAATCGGAAGGCATAAAAGTATATTTATCGAATATACAGAAGAAGAGTTGGTTAATAAAGTGGATTATTTCTGTAGATTTGGTGTGAAGAAGGATGAAGTGGCTCAGTTGATTTTACAGTGCCCGGAAATATTGAAACTGGATCTGGAGAAACCGGTATTCAATGTAATGAAGCTGTTGACACACTTTGGCCTTAGCAATGAAGATATAGAGGAAGTAAGTCGGAGTTATGGTCATGTTATGGGAACAAATAAAATGGCTAATCTTCCTAATGTAATGAAGGCTTTAGGCTTACAAGAGTGGTTCTTCAAGAAAATCAAGGATGGAAATCATATGTTGTTAGCAGATTATATCGCAAGATATCCTAAAGAAGAACAGGATCTAGATTATCAAGAARGTTTAAGGATAATTAGAAGTTTAAAAACACGGGTTCATAATATCGGTAAATTAAATTTCTTGCTTGGCTTGGGCTTTGGAGAAAATACTTTGTCCATAAACCTTTTGAATCATCTTCATGGCACTAGTACTGAGCTGCAYGAAAGATTCGATTGCCTCCTACGTTCAAAGATTGAATTCTCCCGGCTCTGTATGATGGTAAGAACAACCCCAAGGATTCTTAACCAAAATTCGGAAACCATTGAGCAAAAGGTGAATTTCTTCCACCAGGAAATGGGAACTACTTTAAATCATGTGGAAACTTTTCCSGCAATATTGTATTATCACTTAGAGGACCGGATTATACCTAGGTACAGATTCCATAAGTGGCTTTCAGGAAAAGGTCTGAGTTGTAAGAAATATTCTATTCGAAGTATGATTGCGAACAACGAAAAGAAATTTGTGGCTCGTGTCTTCAAAATTCATCCGGCTGCTCCAAAACATTGGTCTGAGCAATTCCGGCATGGTAAGTTGCCAGTTAAAATCAGCAGTGTTTCATCTGATCCATTTTGGGAACTCTTTTTGAGTATTCTTGCTGCTAAGATATGTCACAGAGTGATTTTGCAAAGGAAAAGGAGCCTCTTGTTCAATCCTGTGAATCAACATGCTCGCTTTATTCTTGGATTCTCAAGCCTTGGGCATGGTCAAGCATTTGAGTCCAGTGATTGCGAAGGTTTGAGTCAGTCTCCCTGCTGTTCCCCGGCAACTACCGGACACAATAAACTGGGAAGAAGCTCATCTCCTGCCCAAAAGAATGATTTAGCAGCTCTAGCAGCATCAAGAATTTTCTTGCATAATTACTTTAGGATTTCAAATAGTGGATTTAGAATTGAGATTTCTCCATCAAGATCCAAGTGGTCATTCCAACATGTGCATTACATTTCCACGGCTTCAACTCATCAATCTGGATTGGCTAGCAGTAATGGGGGAAATGAACAATCAGATGCTAAACAGAAAAAGGAAGCTTCACCAGAGGAATGTGATGAAGCTGTTCAAGACTTGAGTACTATAAAAGCTAAAGCCAAGGCTAAAAARTTGGAAGAATCAGATAAGARTGCCGAATCTATTATTAAGAGCTTATGGGCTAAGATTCTAGGAATTGGTCCAGCTATCAAAGCTATTATGTCAATGAGCAGGGATGACTGGGCCAAAAAGCTTCGCCACTGGAAGGATGAGTTTATATCTACAATGAAACACTACTGGTTTGGTACAAAACTACTTTGGGCAGATATTAGGATAAGCTCCAGACTATTGTTGAARCTTGCTGGTGGAAAAAGTCTTTCTAGAAGGGAAAGGCAGCAACTCACACGGACAACAGCTGATATTTTCAGGCTAGTCCCCGTTGCTGTATTTATCATAGTTCCATTCATGGAGTTATTGTTGCCTGTATTCCTGAAACTATTCCCCAACATGCTTCCATCCACTTTCCAGGACAAGTTGAAAGAAGAGGAGGCATTGAAGAGAAGGCTAAATGCAAGAATTGAATATGCCAAGTTTCTTCAAGATACCGTAAAAGAAATGGCGAAGGAGGTTCAACATTCACGAAGTGGAGATATAAAGAAGACAGCAGAAGATCTTGATGGGTTTATGAACAAGGTTAGGACAGGTGCCCGAGTTTCAAATGATGAAATTTTAGGGTTTGCCAAATTATTTAATGATGAGCTTACCTTGGATAACATTAGCAGGCCCCGCTTGGTAAACATGTGTAAATATATGGGAATCAGCCCATATGGCACTGATGCATATTTGCGTTTCATGCTCCGCAAAAGATTACAGGAGATCAAGAATGATGATAAATTGATTCAAGAAGAAGGTGTGGAGTCTCTTTCAGAAGCAGAGCTTCGTCAAGCTTGTAGAGATCGAGGATTACTTGGATTACTTTCAGTGGAGGAAATGCGACAACAGCTTAGGGATTGGCTGGATTTGTCTCTCAACCATTCTGTGCCATCTTCCCTCTTAATTCTTTCTAGAGCATTTTCTGTTTCAGGAAAGGTGGGGCCAGAGGAAGCTGTTCAAGCTACACTGTCTTCTCTGCCAGACGAGGTTGTAGATACGGTTGGGGCAACAAGTTTGCCTTCTGAAGATTCTGTTTCAGAAAGGAAGAGGAAGTTGGAATTTTTAGAAATGCAAGAGGAGCTAATCAAGGAGGAGGAAGAGAAAGAAGTGGAACAAGCCAAAGTGACAGAATCCGTTGGTAGCAAAAGGGATTTACCATTGGAAGAGATGGCTTCTTCAAAATCTAAACAAGCACAAGAAGAAGTAAAAGCAAAGGTACTGGACAAGCAGGAGCAACTTTGTGAGCTCAGCCGTGCATTAGCTGTTTTTGCATCAGCATCTTCAGTTAGCAGAGAACGTGAAGAATTCGTGAGGCTTGTCAAAAAGGAGGTAGATCTGTATAATAGCATGGTAGGGAAAGAGGGTACTGATGCTGAGCAAGAAGCTAGGAAAGCCTATCAAGCTGCAAGGAAGGACAGCGATCGTGCTATGGGGATAGCTTTGGAAGACAAGGTTTCTTCAGCACTTGCTGACAGGGTTGATAATATGCTCCAGACACTTGAAAAAGAAATTGATGATGTTGATGCTAAAATTGGAGACCGCTGGCGGTTGCTAGACAGGGATGCTGATGGGAAAGTAACGCCTGAGGAAGTTGTAGCTGCAGCTATCTATCTGAAGGACACGCTGGGTAAAGAAGCAGTTCATGAACTTATCAGCAACCTTTCCAAAGATAGTGGTATTAGACAAGCTAGTTACTTCATTTAA	3963	0.4133	MNLFLLQVPMFSLFLRRHFFSTKLPTLSKVPTRHRTFALREAQNALTDYLHATRCLPFTYAEHIGNKALCSLMSLIAKVDFSAPTFSKSFQKFLRYHPINEFEVFFESIGIEYSMVSELLPRDKVFFSEDVILFDAACTLCDFGFPWEKLGLLYMAESSIFGMNAEQLNRRLCGFKGFGFGSVEVIGICLAFPFVLLEEGQVRAGRIERLLSDLKLIFLDFGLGRFVEGDVDSWHEMCRKLRVFYDLDSQKGELGELIGRHKSIFIEYTEEELVNKVDYFCRFGVKKDEVAQLILQCPEILKLDLEKPVFNVMKLLTHFGLSNEDIEEVSRSYGHVMGTNKMANLPNVMKALGLQEWFFKKIKDGNHMLLADYIARYPKEEQDLDYQEXLRIIRSLKTRVHNIGKLNFLLGLGFGENTLSINLLNHLHGTSTELHERFDCLLRSKIEFSRLCMMVRTTPRILNQNSETIEQKVNFFHQEMGTTLNHVETFPAILYYHLEDRIIPRYRFHKWLSGKGLSCKKYSIRSMIANNEKKFVARVFKIHPAAPKHWSEQFRHGKLPVKISSVSSDPFWELFLSILAAKICHRVILQRKRSLLFNPVNQHARFILGFSSLGHGQAFESSDCEGLSQSPCCSPATTGHNKLGRSSSPAQKNDLAALAASRIFLHNYFRISNSGFRIEISPSRSKWSFQHVHYISTASTHQSGLASSNGGNEQSDAKQKKEASPEECDEAVQDLSTIKAKAKAKKLEESDKXAESIIKSLWAKILGIGPAIKAIMSMSRDDWAKKLRHWKDEFISTMKHYWFGTKLLWADIRISSRLLLKLAGGKSLSRRERQQLTRTTADIFRLVPVAVFIIVPFMELLLPVFLKLFPNMLPSTFQDKLKEEEALKRRLNARIEYAKFLQDTVKEMAKEVQHSRSGDIKKTAEDLDGFMNKVRTGARVSNDEILGFAKLFNDELTLDNISRPRLVNMCKYMGISPYGTDAYLRFMLRKRLQEIKNDDKLIQEEGVESLSEAELRQACRDRGLLGLLSVEEMRQQLRDWLDLSLNHSVPSSLLILSRAFSVSGKVGPEEAVQATLSSLPDEVVDTVGATSLPSEDSVSERKRKLEFLEMQEELIKEEEEKEVEQAKVTESVGSKRDLPLEEMASSKSKQAQEEVKAKVLDKQEQLCELSRALAVFASASSVSREREEFVRLVKKEVDLYNSMVGKEGTDAEQEARKAYQAARKDSDRAMGIALEDKVSSALADRVDNMLQTLEKEIDDVDAKIGDRWRLLDRDADGKVTPEEVVAAAIYLKDTLGKEAVHELISNLSKDSGIRQASYFI*	1321

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo20g0817	1320	ProSitePatterns	EF-hand calcium-binding domain.	1272	1284	IPR018247	-
	Amo20g0817	1320	Coils	Coil	1107	1127	-	-
	Amo20g0817	1320	Pfam	LETM1-like, RBD	828	1060	IPR033122	GO:0043022
	Amo20g0817	1320	Gene3D	Transcription termination factor 3, mitochondrial	311	552	IPR038538	-
	Amo20g0817	1320	SMART	mt_12	484	518	IPR003690	GO:0003690\|GO:0006355
	Amo20g0817	1320	SMART	mt_12	255	286	IPR003690	GO:0003690\|GO:0006355
	Amo20g0817	1320	SMART	mt_12	151	181	IPR003690	GO:0003690\|GO:0006355
	Amo20g0817	1320	SMART	mt_12	291	322	IPR003690	GO:0003690\|GO:0006355
	Amo20g0817	1320	SMART	mt_12	452	483	IPR003690	GO:0003690\|GO:0006355
	Amo20g0817	1320	Pfam	mTERF	434	535	IPR003690	GO:0003690\|GO:0006355
	Amo20g0817	1320	Pfam	mTERF	240	351	IPR003690	GO:0003690\|GO:0006355
	Amo20g0817	1320	ProSiteProfiles	EF-hand calcium-binding domain profile.	1259	1294	IPR002048	GO:0005509
	Amo20g0817	1320	ProSiteProfiles	Letm1 ribosome-binding (RBD) domain profile.	889	1096	IPR033122	GO:0043022
	Amo20g0817	1320	MobiDBLite	consensus disorder prediction	715	730	-	-
	Amo20g0817	1320	MobiDBLite	consensus disorder prediction	702	730	-	-
	Amo20g0817	1320	PANTHER	LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN	682	1311	IPR044202	GO:0005743
	Amo20g0817	1320	PANTHER	OSJNBA0067K08.12 PROTEIN	682	1311	-	-
	Amo20g0817	1320	Coils	Coil	1243	1263	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo20g0817	Amo-Chr20	12038683	12049054	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo20g0817	583	1310	EF-hand Containing Proteins	AT3G59820	62.534	0.0	871

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Amo20g0817		LETM1	5.2e-107	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo20g0817	K17800		-	adu:107486036	1102.04