LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo20g0809	ATGTCAGACGTWGAAGAATATCGCTGCTTCATTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGTTAAAGGATACATTTGAAAAGTTTGGCAAGCTTGTTGAAGCAAAGGTGGTTGTTGACAAATTCTCTGGGCGCTCTCGTGGTTTTGGATTTGTCACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGCATGGATTTAGATGGGCGAACTATCACTGTRGATAAAGCTCAGCCTCAACAAGGATCGGGTAGAGATGATGGTGACCGCCACCGTGATCGTGGTCGAGATCGTGACCGTGATCGCGATCGTAACAGAGATTATGGAGGCGGTCGAGGATCTAAYGGTGGTGAATGCTTTAAGTGTGGTAAACCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGGGAAGAGGAGGAAGGTATGGTGGCAGGGAAGGTGGTAGACATGGTGGAAGTGGTTATGGTCCTGATAGAAATGCAGATCGTTCTTCCGGCGGACGCAGCAGGGATGCTGGCAGGGATGGAGATTCAGGAAATGATCGATACTATCGTGATCGTGCTGGACCATATGAACGACGAGGATCAGGAGGTGCTCGTTAA	621	0.475	MSDVEEYRCFIGGLAWSTSDRKLKDTFEKFGKLVEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGMDLDGRTITVDKAQPQQGSGRDDGDRHRDRGRDRDRDRDRNRDYGGGRGSNGGECFKCGKPGHFARECPSEGGRGGRYGGREGGRHGGSGYGPDRNADRSSGGRSRDAGRDGDSGNDRYYRDRAGPYERRGSGGAR*	207

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo20g0809	206	SMART	c2hcfinal6	124	140	IPR001878	GO:0003676\|GO:0008270
	Amo20g0809	206	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	85	IPR000504	GO:0003723
	Amo20g0809	206	MobiDBLite	consensus disorder prediction	76	206	-	-
	Amo20g0809	206	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	10	79	IPR000504	GO:0003723
	Amo20g0809	206	SUPERFAMILY	Retrovirus zinc finger-like domains	107	144	IPR036875	GO:0003676\|GO:0008270
	Amo20g0809	206	Gene3D	-	116	177	-	-
	Amo20g0809	206	MobiDBLite	consensus disorder prediction	169	199	-	-
	Amo20g0809	206	PANTHER	TRANSFORMER-2-RELATED	1	166	-	-
	Amo20g0809	206	MobiDBLite	consensus disorder prediction	88	115	-	-
	Amo20g0809	206	Pfam	Zinc knuckle	124	140	IPR001878	GO:0003676\|GO:0008270
	Amo20g0809	206	SUPERFAMILY	RNA-binding domain, RBD	4	116	IPR035979	GO:0003676
	Amo20g0809	206	SMART	rrm1_1	8	81	IPR000504	GO:0003723
	Amo20g0809	206	ProSiteProfiles	Zinc finger CCHC-type profile.	125	140	IPR001878	GO:0003676\|GO:0008270
	Amo20g0809	206	PANTHER	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	1	166	-	-
	Amo20g0809	206	Gene3D	-	2	103	IPR012677	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo20g0809	Amo-Chr20	11917367	11920557	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo20g0809	10	93	Eukaryotic Initiation Factors Gene Family	AT1G22760	35.714	2.13e-10	57.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo20g0809	-		-	gmx:100815224	273.478