Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0804 ATGGGGGATAGCAATAATGTCAATCTTCCACCGGGGTTTCGATTTTATCCCACTGATGAAGAGCTTGTAGTCCATTTCCTTCAGAGAAAAGCAGCACTTCTACCTTGCCACCCTGATGTCATTCCTGATCTTGATCTCTACCCTTTTGATCCATGGGAACTTGATGGTAGAGCTTTGGCAGAGGGGAACCAATGGTACTACTACAGCAGAAGGACACAAAATAGGGTCACTGCCAATGGTTATTGGAATCCAATGGGAATTGAAGAGGCAGTGGTTTCAAACTCAAGCAACAGGAGAGTTGGTATCAAGAAATTTTATGTGTTCTATGTTGGAGAAGCCCCTCATGGTAACAGAACCAATTGGATCATGCAAGAGTATCGTCTTTCAGATTCTGCAGCATCCTCTAGCAGATCATCAACCAAAAGAAAATCACAACCAAAAACAGATCATAGTAAATGGGTGGTATGTAGAGTTCATGAAAGTGATGAAAATGATGATGATGGTGATGGTGATGGAACAGAACTCTCTTGTTTGGATGAAGTTTTCTTGTCATTGGATGATCTTGATGAAGTAAGCTTGCCAAATTAG 588 0.415 MGDSNNVNLPPGFRFYPTDEELVVHFLQRKAALLPCHPDVIPDLDLYPFDPWELDGRALAEGNQWYYYSRRTQNRVTANGYWNPMGIEEAVVSNSSNRRVGIKKFYVFYVGEAPHGNRTNWIMQEYRLSDSAASSSRSSTKRKSQPKTDHSKWVVCRVHESDENDDDGDGDGTELSCLDEVFLSLDDLDEVSLPN* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0804 195 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Amo20g0804 195 PANTHER NAC TRANSCRIPTION FACTOR 56 6 192 - -
Amo20g0804 195 MobiDBLite consensus disorder prediction 142 163 - -
Amo20g0804 195 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Amo20g0804 195 MobiDBLite consensus disorder prediction 133 173 - -
Amo20g0804 195 Pfam No apical meristem (NAM) protein 10 128 IPR003441 GO:0003677|GO:0006355
Amo20g0804 195 PANTHER NAC DOMAIN-CONTAINING PROTEIN 104 6 192 - -
Amo20g0804 195 SUPERFAMILY NAC domain 6 159 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0804 Amo-Chr20 11868880 11869807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0804 1 160 NAC Transcription Factor Family AT1G69490 42.857 9.59e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo20g0804 NAM 2.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0804 - - gmx:100788893 322.783