Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0790 ATGCCGGTCAGCTTAGACTGTTCTGCTGTTCTTAGCTTCATGAACAAATTGATGAATAAGTCAAACAGTCAAAAGCACTCAGCTTGTTCGACATTACCCTCTAAACTCACAACAACAATCACACACTATTCTTTACTTTCCACAAACATGAGAATCTTCATCACTCACCTTAACTACCTCATCATCCTTGTTATTAGCTTCTTCTTCTTCTTCATCATTCCATCCACCTCTTCGGATACTTTAACCGGAACACAAAACCTCACAACCAACCAAACGCTATTATCACAAAACCAATCCTTCGTGCTGGGCTTCTTCAGAGGTTCCAACACCAACTATTATCTCGGAATATGGTACAACAACATCATTCCTCAAACAATAGTTTGGGTTGCAAACAGAGACAACCCTGTTGACAACTCTACCGGCTATCTCAAGATCGGAGACAACGGAAACTTTGTCCTCCTCAATTCATCCGGGAACCCCGCATGGTCCTCCAACCAAACCAGCGCCAAGAATCCAGTTCTCCAGCTCCTCGATACCGGTAACCTTGTTCTCAAAGATTCATCAGACAAGACCAATAATAACTACTTATGGCAGAGCTTTGATTACCCAACGGATACCGTGATACCGGGGATGAAGATCGGTTGGAACTTGGACACAGGAACGGAGAAGCATTTAACATCATGGAAGATCAAGGGTGAAGACCCTTCAAGTGGTGACTACACTTTGAAGATAGATTACCATGGTTTACCTGAGGCTTTCCTCAGGAGAAACCAAACTATAATATTCCGAACTGGTCCTTGGAATGGTGAGAGATTCAGTGGGGTCCCTGAGATGAAAAACAACACCGGTCTCGACTTCAATTTCTCTTATGATGAGCATGGCGTGTGGTACTCTTTTTCCGTTACAAACCTTTCCTTGTTGTCGAGGGTAATTGTGACATCTGATGCTGATGGCAAGGCAATTCAACGCTACATGTTGATACAAGGAAGTTGGAACAAGTTCTGGTACGAACCAGCTGATGAATGCGATTACTATAGACAGTGTGGTCCATATGGAGTGTGTGACAAGAATGCTTCACCGATTTGCAAGTGTATGCAGGGGTTCAGGCCTAAGAACCAAGAAGCTTGGAACTTGGGAGATAGATCTGATGGGTGTGTGAGGAACACGGTTTTGAATTGTTCCACTGACAAGTTCTTGCATCTTGAGCACATCAAGCTGCCGGAGACGAGCAGTGTGTTTATGAATAAGAGTATGACACTTGATGAATGTGGGAGTTTGTGTAAGAGGAATTGTTCATGCACTGCATATGCAAACATCGATATCAGAAATGGAGGAAGTGGCTGTGTCATGTGGCTTGATCAACTCATGGACATGAGTGTCTTCGCTACCTACGGCCAAGATCTCTTTGTCAGATTGGCAGCTGCTGATATAGGATCTACTAGCTCCAACAAGAATCATAGAGTAGTTCTGGCTACTGGTATCTCACTTTGTGCACTTGTTTTAGTTTTGGGATTGGTTGCTATTTGTTACTTAAGGAAGAAGATAAAACAAAAATCAAGAGGTGATGAAAGGAATATGGATGATCTGGAATTGCCAATGTTTAATTTTGATACCTTAATGATGGCTACAAACAGTTTCTCTCAAGATAATAAACTTGGACAAGGAGGCTTCGGTAGTGTTTATAGGGGCAGATTGATTGAAGGCCAAGAAATTGCTGTAAAAAGATTGTCGGAAGACTCTAGACAAGGAGTTACAGAGTTTGAAAATGAAGTCAAATTAATGGTCAAACTCCAACACCGAAATCTTGTTCAGTTGCTTGGTTGCTGCATTGAGAAGAATGAGAAAATGTTGGTGTATGAATATATGGAAAATAGAGGCCTTGATTCCATTTTATTTGACAAATCAAAAAGTCTCTTGCTTAACTGGGAGAAGCGTTTCAATATTATATATGGAATAGCTAGAGGACTTCTTTATTTACATCAAGATTCAAGATTTCGAATTATTCATAGAGATCTCAAGACAAGTAATATATTATTAGATATTGAAATGAATCCAAAGATATCAGACTTTGGAATTGCTAGAATTTTTTACAACGATCAAACACAAGCAAAAACAGTAAGAGTTGTTGGAACATATGGTTATATGGCTCCGGAATATATTATGGGTGGGAACTTCTCAGAAAAATCGGATGTTTTTAGCTTTGGAGTTATAGTATTAGAAATTATAACGGGAAAGAAGAATAGAAGGTTTTCCAATAATAATGATGAATTGAATCTCTTGGAAAATGTATGGAGACATTGGCATGAAGGAACTATATTGACATTAATTGATCCATTCATTGGAAATTTATATACAGAAGCTGAAATTGTAAGATGCATACATATTGGACTCTTATGTGTCCAAGAATGTGCAGAAGATAGACCAACAATGTCTTTAGTGATCTTAATGTTGAGAAGTGAAGCCCCATCAATGCCAAATCCTAAAATTCCTGGATTTTCCGCAAGAAAAAATTATCCAGAGACTGATTTATCTTCAAGTAAGCAAGATGAATCACGGAGTGTGAATCAAGTCACAATCACTTTATTGAATGCTAGGTAG 2598 0.3941 MPVSLDCSAVLSFMNKLMNKSNSQKHSACSTLPSKLTTTITHYSLLSTNMRIFITHLNYLIILVISFFFFFIIPSTSSDTLTGTQNLTTNQTLLSQNQSFVLGFFRGSNTNYYLGIWYNNIIPQTIVWVANRDNPVDNSTGYLKIGDNGNFVLLNSSGNPAWSSNQTSAKNPVLQLLDTGNLVLKDSSDKTNNNYLWQSFDYPTDTVIPGMKIGWNLDTGTEKHLTSWKIKGEDPSSGDYTLKIDYHGLPEAFLRRNQTIIFRTGPWNGERFSGVPEMKNNTGLDFNFSYDEHGVWYSFSVTNLSLLSRVIVTSDADGKAIQRYMLIQGSWNKFWYEPADECDYYRQCGPYGVCDKNASPICKCMQGFRPKNQEAWNLGDRSDGCVRNTVLNCSTDKFLHLEHIKLPETSSVFMNKSMTLDECGSLCKRNCSCTAYANIDIRNGGSGCVMWLDQLMDMSVFATYGQDLFVRLAAADIGSTSSNKNHRVVLATGISLCALVLVLGLVAICYLRKKIKQKSRGDERNMDDLELPMFNFDTLMMATNSFSQDNKLGQGGFGSVYRGRLIEGQEIAVKRLSEDSRQGVTEFENEVKLMVKLQHRNLVQLLGCCIEKNEKMLVYEYMENRGLDSILFDKSKSLLLNWEKRFNIIYGIARGLLYLHQDSRFRIIHRDLKTSNILLDIEMNPKISDFGIARIFYNDQTQAKTVRVVGTYGYMAPEYIMGGNFSEKSDVFSFGVIVLEIITGKKNRRFSNNNDELNLLENVWRHWHEGTILTLIDPFIGNLYTEAEIVRCIHIGLLCVQECAEDRPTMSLVILMLRSEAPSMPNPKIPGFSARKNYPETDLSSSKQDESRSVNQVTITLLNAR* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0790 865 PANTHER - 65 864 - -
Amo20g0790 865 ProSitePatterns Serine/Threonine protein kinases active-site signature. 667 679 IPR008271 GO:0004672|GO:0006468
Amo20g0790 865 Pfam PAN-like domain 393 458 IPR003609 -
Amo20g0790 865 ProSiteProfiles PAN/Apple domain profile. 393 473 IPR003609 -
Amo20g0790 865 CDD STKc_IRAK 552 817 - -
Amo20g0790 865 Pfam D-mannose binding lectin 125 229 IPR001480 -
Amo20g0790 865 Gene3D - 73 200 IPR036426 -
Amo20g0790 865 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 65 864 - -
Amo20g0790 865 Gene3D Phosphorylase Kinase; domain 1 508 621 - -
Amo20g0790 865 SMART ntp_6 393 472 IPR003609 -
Amo20g0790 865 PIRSF SRK 49 865 IPR024171 GO:0004674
Amo20g0790 865 MobiDBLite consensus disorder prediction 826 854 - -
Amo20g0790 865 ProSiteProfiles Protein kinase domain profile. 546 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0790 865 Gene3D Transferase(Phosphotransferase) domain 1 622 825 - -
Amo20g0790 865 ProSitePatterns Protein kinases ATP-binding region signature. 552 574 IPR017441 GO:0005524
Amo20g0790 865 Pfam Protein tyrosine and serine/threonine kinase 548 761 IPR001245 GO:0004672|GO:0006468
Amo20g0790 865 SUPERFAMILY alpha-D-mannose-specific plant lectins 111 268 IPR036426 -
Amo20g0790 865 CDD B_lectin 87 203 IPR001480 -
Amo20g0790 865 Pfam S-locus glycoprotein domain 262 372 IPR000858 GO:0048544
Amo20g0790 865 CDD PAN_AP_plant 389 473 - -
Amo20g0790 865 SUPERFAMILY Protein kinase-like (PK-like) 529 817 IPR011009 -
Amo20g0790 865 SMART blect_4 84 203 IPR001480 -
Amo20g0790 865 Gene3D Hepatocyte Growth Factor 389 469 - -
Amo20g0790 865 ProSiteProfiles Bulb-type lectin domain profile. 78 197 IPR001480 -
Amo20g0790 865 Pfam Domain of unknown function (DUF3403) 819 865 IPR021820 GO:0004674
Amo20g0790 865 SMART serkin_6 546 780 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0790 Amo-Chr20 11419386 11426897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0790 499 865 Receptor kinase-like Gene Family AT4G23150 50.532 1.64e-122 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo20g0790 PK_Tyr_Ser-Thr 4.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0790 - - aip:107621495 1710.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0790 20 11419386 11426897 Amo20g0790 20 11419386 11426897 ECH