Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0789 ATGAGAATCTTCTTCAACCACCTTAACTACCTCATCATCATTCTTATTAGCCTCTTCTTCATCACTCCACCAGCCTCTACCGACACTTTAACGGGAAAACAAATCCTCAGAACTAACCAAACGCTATTGTCACAAAACCAAACCTTCGTGCTGGGCTTCTTCAGAGGTTCCAACACCAACTATTACCTCGGAATATGGTACAACAACATCAATCCTCAAACAATTGTTTGGGTTGCAAACAGAGACAACCCCATTGACAACTCTACAGGCTATCTCAAGATCGGAGACAACGGAAACTTTGTTCTTCTCAATTCATCCGGGAACCTCGCATGGTCCTCCAACCAAACCAACGCAAGGAATCCAGTTCTTCAGCTCCTCGATACAGGTAACCTTGTTCTCAAGGATTCATCAGACAATACCAATAGTAACTACTTATGGCAGAGCTTCGATTATCCAACCGATACCATGTTACCGGGGATGAAGCTTGGTTGGAACTTGGACACAAGAACAGAGAAGCACTTAACATCATGGAAGGTCGCAGGTGAAGACCCTTCAAGCGGTGACTACACTTTAAAGATAGATTACCATGGTTTACCAGATATTTTCATCAGGAGAAACCAAACTATAATATTCCGAACTGGTGATTGGAATGGTGAGAGATTCACTGGGGTCCCAGGGATGGGAGACAACATAAATGAAATCAAGTACAATTTCACTTATGATGAGCATGGTGTGTGGTACTCTTACTCCGTTACAATAGCTTCCTTGTTGTCGAGGTTAATCCTGACATCTGATTCTGATGGCCAGTATCAACGCTACATGTGGATACAAGGAACATGGAGCAAGTTCTCGTACGTACCAGCGTATCAATGCGATTACTACAGAGTGTGTGGTTCGTATGGAGTGTGTGACAATGATGCTTCGCCGATTTGCACTTGTATGCAGGGGTTCAGGCCTAAGAACCAAGAAGCTTGGAACTTGAGAGATGGGTCTGATGGGTGTGTGAGGAACACGGGTTTGAATTGTTCCACTGACAAGTTCTTGCATCTTGAGAACATGAAGCTGCCGGAGACAACAAGTGTGTTTGTGAATAAGAGTATGACACTTGATGAATGTGGGAGTTTGTGCAAGAGGAATTGTTCATGCACTGCATATGCAAACATCTACATCACAAATGGAGGAAGTGGCTGTGTTATGTGGCTTGGTCAACTCTTTGACATGGTTGTCTTCCCTAAGAATGGCCAAGATCTCTATGTCAGATTGGCCGCTGCTGATATAGGATCTACTAGCTCCAACAAGAATCATAGAGTAGTTCTGGCTATTGGCATCACACTTAGTGCACTTGTTTTAGTTTTGGGATTGGTTGCTATTTGTTACTTAAGGAAGAAGAGCAAACAAAAATCAAGAGGTTTTGTCCACAGAAGTCATGATTTCTTAATGAATGAGGTGGTGCCTTCTGTTGAAAGGAACATGGATGATTTAGAGTTGCCAATGTTTGATTTTGATACTCTAACAATTGCTACAAACAATTTCTCTCAAGATAATAAACTTGGAGAAGGAGGCTTCGGTAGTGTTCATAAGGGTAGATTGGTTGATGGTCAAGAAATTGCTATAAAAAGATTATCAAAAGACTCTGGACAAGGAATAGAAGAGTTTAAGAATGAAGTCAAGTTAATTGTCAAACTACAACACCGAAATCTCGTTCGGTTGCTTGGTTGCTGCATTGAGAAGGATGAGAAGATATTGGTTTATGAGTATATGGAAAATAGAGGCCTGGATTCCGTTTTGTTTGACAAATCAAAAGGACCTTTGCTTGATTGGAAAAAACGTTTCAATATTATATATGGTATAGCTAAAGGGCTTCTATATTTGCATCAAGATTCAAGATTTCGAATTATTCATAGAGATCTTAAGACAAGTAACATATTACTAGATAATGAAATGAATCCAAAGATATCAGACTTTGGAATGGCTAGAATTTTTGACGAAGATCAAATGCAAGCAAAAACACGAAGAATTGTTGGAACATATGGTTACATGTCTCCAGAATATGCTATGGACGGAAATTTTTCGGTAAAAACTGATGTTTTTAGTTTTGGAGTTCTAGTATTGGAGATCATAACAGGAAAGAAGAATAGAGGGTTCTACATTGATGACGATGAATTGAATCTTTTAGGAAATGTATGGAGGCATTGGCATGAAGGAACTGTATTGACATTGATTGATCCATCCATTGGCAATTCATACATAGAGTCTGATGTTATAAGATGCATACATATTGGACTTTTATGTGTTCAAGAACATGCAGAAGATAGACCAACAATGTCTTCAGTGATCTTAATGTTAAATAATGAAGTTCCATCATTGTCATATCCTAAAAATCCTGGATTTTTCGCAAGAAAAAATCATCCAGAGACTGATTCATCTTCAAATAAACAAGATGAAATATGGAGTGTGAATCAAGTCACAACGACAATGTTAGAAGCTAGATAA 2493 0.3923 MRIFFNHLNYLIIILISLFFITPPASTDTLTGKQILRTNQTLLSQNQTFVLGFFRGSNTNYYLGIWYNNINPQTIVWVANRDNPIDNSTGYLKIGDNGNFVLLNSSGNLAWSSNQTNARNPVLQLLDTGNLVLKDSSDNTNSNYLWQSFDYPTDTMLPGMKLGWNLDTRTEKHLTSWKVAGEDPSSGDYTLKIDYHGLPDIFIRRNQTIIFRTGDWNGERFTGVPGMGDNINEIKYNFTYDEHGVWYSYSVTIASLLSRLILTSDSDGQYQRYMWIQGTWSKFSYVPAYQCDYYRVCGSYGVCDNDASPICTCMQGFRPKNQEAWNLRDGSDGCVRNTGLNCSTDKFLHLENMKLPETTSVFVNKSMTLDECGSLCKRNCSCTAYANIYITNGGSGCVMWLGQLFDMVVFPKNGQDLYVRLAAADIGSTSSNKNHRVVLAIGITLSALVLVLGLVAICYLRKKSKQKSRGFVHRSHDFLMNEVVPSVERNMDDLELPMFDFDTLTIATNNFSQDNKLGEGGFGSVHKGRLVDGQEIAIKRLSKDSGQGIEEFKNEVKLIVKLQHRNLVRLLGCCIEKDEKILVYEYMENRGLDSVLFDKSKGPLLDWKKRFNIIYGIAKGLLYLHQDSRFRIIHRDLKTSNILLDNEMNPKISDFGMARIFDEDQMQAKTRRIVGTYGYMSPEYAMDGNFSVKTDVFSFGVLVLEIITGKKNRGFYIDDDELNLLGNVWRHWHEGTVLTLIDPSIGNSYIESDVIRCIHIGLLCVQEHAEDRPTMSSVILMLNNEVPSLSYPKNPGFFARKNHPETDSSSNKQDEIWSVNQVTTTMLEAR* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0789 830 Pfam D-mannose binding lectin 74 178 IPR001480 -
Amo20g0789 830 Pfam PAN-like domain 342 407 IPR003609 -
Amo20g0789 830 ProSitePatterns Protein kinases ATP-binding region signature. 517 539 IPR017441 GO:0005524
Amo20g0789 830 SMART blect_4 33 152 IPR001480 -
Amo20g0789 830 Pfam Domain of unknown function (DUF3403) 789 830 IPR021820 GO:0004674
Amo20g0789 830 ProSiteProfiles Protein kinase domain profile. 511 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0789 830 Gene3D - 23 149 IPR036426 -
Amo20g0789 830 SUPERFAMILY Protein kinase-like (PK-like) 496 811 IPR011009 -
Amo20g0789 830 CDD STKc_IRAK 517 784 - -
Amo20g0789 830 ProSiteProfiles PAN/Apple domain profile. 342 422 IPR003609 -
Amo20g0789 830 Gene3D Transferase(Phosphotransferase) domain 1 587 790 - -
Amo20g0789 830 SMART serkin_6 511 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0789 830 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Amo20g0789 830 SMART ntp_6 342 421 IPR003609 -
Amo20g0789 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 632 644 IPR008271 GO:0004672|GO:0006468
Amo20g0789 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 60 217 IPR036426 -
Amo20g0789 830 Gene3D Phosphorylase Kinase; domain 1 486 586 - -
Amo20g0789 830 PIRSF SRK 1 830 IPR024171 GO:0004674
Amo20g0789 830 CDD B_lectin 34 152 IPR001480 -
Amo20g0789 830 Pfam Protein tyrosine and serine/threonine kinase 513 779 IPR001245 GO:0004672|GO:0006468
Amo20g0789 830 CDD PAN_AP_plant 340 422 - -
Amo20g0789 830 PANTHER - 12 829 - -
Amo20g0789 830 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544
Amo20g0789 830 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0789 Amo-Chr20 11395453 11398833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0789 499 830 Receptor kinase-like Gene Family AT4G11530 57.864 1.24e-129 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo20g0789 PK_Tyr_Ser-Thr 6.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0789 - - aip:107621495 1319.68