Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0788 ATGCCAACCTCATTCACTAGTTTCCTTAAMCACCTCCTCATTTCCTTCTTCCTCTTCTTCCTCACTTCATCAAACTCTTCCGATACATTAACCGGAACACAAGTTCTTACTACCAACCAAACCCTCTTATCACAGAACCAAACCTTCGTTCTCGGCTTCTTCAGAGGTTCCAACACCAACTATTACCTCGGAATATGGTACAACAACATCAATCCTCAAACCAGAGTTTGGGTTGCAAACAGAGACAACCCCATTGACAACTCCACAGGCTATCTCAAGATCGGAGACAACGGAAACTTTGTCCTTCTCAATTCATCCGGCAACCCCGCATGGTCCTCCAACCAAACCAGTGCCAAGAATCCAGTTCTCCAGCTCCTGGAAACCGGTAACCTTGTTCTCAAAGATTCAGAACAGAGCAACAACTACCTATGGCAGAGCTTCGATTACCCAACAGATACCTTGCTACCGGGGATGCAGATGGGTTGGAACTTCGACACAGGAATTGAGAAGCACTTAACATCGTGGAAGGTCACAGGTGAAGACCCTTCTTCCGGTGACTACACTTTCAAGCTAGATTACCGCGGTTTACCTGAGATTTTTCTSAGGAGAAACCAGACTATCATATACCGAAGTGGTTCCTGGAATGGTGAGAGATTCARCGGAGTTCCAGAGATGGACACCGATACTGATTCCATTGTGTTCAGCTTCTCCGATGACGCGCACGGCGTGTTCTACTMTTTCTCCATCGGGAACGCTTCTTTGTTATCGAGGCTAACGRTGACSTCAGATTCAGRCGGWGAACTTCAAMGGYGGACGTGGAYAGMGAGCAGCGAAWCTTGGAACRAGTTCTGGTACGCACCGGCGGATCAATGCGACCATTACAGGGAGTGTGGTCCGTACGGAGTGTGTGACAATAATGCATCGCCGGTTTGCACATGTATGAAAGGGTTCAGTCCTAAGAACCCTCAGGCTTGGAATCTGAGAGATGGATCTGGCGGGTGTGTGAGGAACACCGATCTGGATTGCCCGACTGACAAGTTCTTGCATCTTGAGAGCATGAAGCTGCCGGAGACGACGACGGTGTTTGTTAACAGAAGTATGACGTTAACGGAATGCGAGAGCCTGTGCCAACGGAATTGTTCATGCACTGCATATGCAAACATTGATATCACAAATGGCGGAAGTGGTTGTGTTATGTGGCTTGGTCAACTCTTTGACTTGAGGAACTACCCTTCCGGCAGTGGCCAAGATCTCTATGTTCGATTATCAGCTGCTGATATAGGATCTGCTGGCTCCAAACATCGTAAAGCTGAGGCTATAGGCATCTCACTTAGTGTAGTTGCTATAGTTTTGGGATTGGTTGCTATTTGTTACTTAAGGAAGAAGAAACAACACAGAGGTTCAATTCACAGAAGTCATGATTTGCTAATGAATGAGGGGGTGCCTTCTAGAGGACACTCGGGTGACAGGAACATGGATGATCTAGAGTTGCCCATGTTTGATTTTGATACCTTAACAATGGCTACCAACAACTTCTCTCAAGATAATAAACTTGGACAAGGAGGATTTGGTAGTGTTTATAGGGGAAGTTTGATTGAAAGCCAAGAAATTGCTGTAAAGAGGTTATCAAAAGACTCTGGACAAGGAATTGAGGAGTTTAAGAATGAGGTCAAGTTAATTGTCAAGCTCCAACATCGAAACCTTGTTCGGCTGCTTGGTTGCTGCATTGAGAAGGATGAGAAGATGTTGGTGTATGAATATATGGAAAACAGAAGCCTTGACTCCATTTTGTTTGACAAAGCTAAAAGATCCTTGCTAGATTGGAAAAGTCGATTCAATATTATATGTGGGATAGCTAGAGGACTTCTTTATTTGCACCAAGATTCTAGATTTCGGATTATTCATAGGGATCTCAAAGCAAGCAATATTCTACTTGACAGTGAAATGAACCCAAAGATATCTGACTTTGGGATGGCCAGAATTTTTGGAAGTAATCAAACAGAAGCAAATACAATAAGAGTTGTTGGAACATATGGTTATATGTCTCCTGAATATGCTATGGACGGAAATTTCTCAGTAAAATCTGACGTTTTTAGTTTCGGAGTTCTAGTATTGGAAATAATTACGGGCAAGAAAAATAGAGGGTTTTACTATGCCAATGATGAATTGAATCTTTTGGGCAACGTGTGGAGGCAATGGAATGAAGGAACTGCTTTAGAACTAGTTGATCAATCCATTGGCAATTCATATGCAGAATCTGAAGTTCTAAGATGCATACATGTTGGTCTCTTATGTGTCCAAGAACGTGCAGAAGATAGACCAACAATGTCCTCGGTAGTTTTAATGTTGAGTAGTGAAGCTGCATTAATGCCACGTCCTAAAAATCCTGGCTTTTCTCTAAGAAAGAATCATCCAGAGACGGATTCATCTTCAAGTAATCAAGATAAAACATGGAGTGTGAATCAAGTCACAGTCACAATGCTAAATGCTAGGTAG 2496 0.4303 MPTSFTSFLXHLLISFFLFFLTSSNSSDTLTGTQVLTTNQTLLSQNQTFVLGFFRGSNTNYYLGIWYNNINPQTRVWVANRDNPIDNSTGYLKIGDNGNFVLLNSSGNPAWSSNQTSAKNPVLQLLETGNLVLKDSEQSNNYLWQSFDYPTDTLLPGMQMGWNFDTGIEKHLTSWKVTGEDPSSGDYTFKLDYRGLPEIFLRRNQTIIYRSGSWNGERFXGVPEMDTDTDSIVFSFSDDAHGVFYXFSIGNASLLSRLTXTSDSXGELQRXTWXXSSEXWNXFWYAPADQCDHYRECGPYGVCDNNASPVCTCMKGFSPKNPQAWNLRDGSGGCVRNTDLDCPTDKFLHLESMKLPETTTVFVNRSMTLTECESLCQRNCSCTAYANIDITNGGSGCVMWLGQLFDLRNYPSGSGQDLYVRLSAADIGSAGSKHRKAEAIGISLSVVAIVLGLVAICYLRKKKQHRGSIHRSHDLLMNEGVPSRGHSGDRNMDDLELPMFDFDTLTMATNNFSQDNKLGQGGFGSVYRGSLIESQEIAVKRLSKDSGQGIEEFKNEVKLIVKLQHRNLVRLLGCCIEKDEKMLVYEYMENRSLDSILFDKAKRSLLDWKSRFNIICGIARGLLYLHQDSRFRIIHRDLKASNILLDSEMNPKISDFGMARIFGSNQTEANTIRVVGTYGYMSPEYAMDGNFSVKSDVFSFGVLVLEIITGKKNRGFYYANDELNLLGNVWRQWNEGTALELVDQSIGNSYAESEVLRCIHVGLLCVQERAEDRPTMSSVVLMLSSEAALMPRPKNPGFSLRKNHPETDSSSSNQDKTWSVNQVTVTMLNAR* 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0788 831 MobiDBLite consensus disorder prediction 792 818 - -
Amo20g0788 831 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Amo20g0788 831 PANTHER - 15 830 - -
Amo20g0788 831 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
Amo20g0788 831 Pfam D-mannose binding lectin 74 176 IPR001480 -
Amo20g0788 831 SMART serkin_6 512 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0788 831 Pfam Domain of unknown function (DUF3403) 785 831 IPR021820 GO:0004674
Amo20g0788 831 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Amo20g0788 831 Pfam PAN-like domain 343 407 IPR003609 -
Amo20g0788 831 Gene3D - 22 147 IPR036426 -
Amo20g0788 831 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 216 IPR036426 -
Amo20g0788 831 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 830 - -
Amo20g0788 831 SMART ntp_6 342 422 IPR003609 -
Amo20g0788 831 Gene3D Hepatocyte Growth Factor 342 421 - -
Amo20g0788 831 CDD STKc_IRAK 518 783 - -
Amo20g0788 831 CDD B_lectin 33 150 IPR001480 -
Amo20g0788 831 MobiDBLite consensus disorder prediction 802 818 - -
Amo20g0788 831 CDD PAN_AP_plant 338 423 - -
Amo20g0788 831 Pfam Protein tyrosine and serine/threonine kinase 514 781 IPR001245 GO:0004672|GO:0006468
Amo20g0788 831 ProSitePatterns Protein kinases ATP-binding region signature. 518 540 IPR017441 GO:0005524
Amo20g0788 831 Gene3D Transferase(Phosphotransferase) domain 1 588 791 - -
Amo20g0788 831 PIRSF SRK 1 831 IPR024171 GO:0004674
Amo20g0788 831 Pfam S-locus glycoprotein domain 209 321 IPR000858 GO:0048544
Amo20g0788 831 ProSiteProfiles Protein kinase domain profile. 512 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0788 831 SMART blect_4 33 150 IPR001480 -
Amo20g0788 831 SUPERFAMILY Protein kinase-like (PK-like) 497 811 IPR011009 -
Amo20g0788 831 Gene3D Phosphorylase Kinase; domain 1 487 587 - -
Amo20g0788 831 ProSiteProfiles EGF-like domain profile. 287 323 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0788 Amo-Chr20 11368752 11373805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0788 500 831 Receptor kinase-like Gene Family AT4G11530 58.754 5.73e-133 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo20g0788 PK_Tyr_Ser-Thr 1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0788 - - aip:107621495 1195.65