Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0787 ATGAGTGCTTCTACAAATCTTAATGTCTATTTCTTCTGTGCCTTCATCTTCTCATTCAGTTCCTTTTTCAATATTGTAACCTCTGTGGATACCTTAACTGCAACACAGTCACTTGGGATCAACCAAACACTTGTATCCTCAAAGCAGGTGTTTGAGTTCGGCTTCTTCAATGGAACCAACAACTCCACATGGTACTTAGGAATATGGTACAAGGACATTCCTCAAAGAACAGTGGTTTGGGTTGCAAACCGAGACACCCCACTTAAGGATACCAATGGAACTCTCAAGATTGGAGCAAGGGGGAACCTTGTTCTTCTTGATCATGCAGGAAATGCTATTTGGTCCTCAAATGAAACCACTGCTACAAATCCAGTTCTTCAGCTTTTGGATACAGGAAACTTGATTCTCAGAGAAGCAAACAAAAATGGTGCAATTGATGGCAACTATCTATGGCAGAGCTTTGATTATCCAACAGATACTTTGTTACCGGGAATGAAGCTTGGTTGGAACTTGGACACTGGTATTGAGCTCTATATAACATCATGGAAGAGCCAAGATGACCCCTCAAGTGGTGATTTTTCTTTTAGGATGGAAAAACTTGGGCTACCAGAAATTTTTTTATGGAATAATCAAGTTAAGGTACATAGAAGTGGACCATGGAATGGAGTGAGATTCAGTGAAATACCAGTGGTTTCATCAAATGCTGTTCTTCAAGATAATATGTCTGTGGATTCACATGAAGTGTACTACATACTTTCAGCTATCAATCAGTCCAAGTTTTCAAGAAAAACTGTGAGCTGGAATGGCGAAATTCAACGTCTTGTGTGGGTGGAAAGTAGCCAAAGCTGGAAGAAGCTATGGTTTGCACCAAGTGGTGAATGTGACAAGTATGGTATCTGTGGTCCATATGGTATCTGTGACTCCAATGCTTTCCCAGTATGCAGTTGTATTCAAGGCTTCAGTGTCAAGAACCAGACAGAGTGGGATTTCAGGGATTTTTCTAATGGTTGTGTAAGAAAGACAAGATTGGATTGTGGGAGAGACAAGTTTCTGAAGCTGCAACATGTGGAACCACCAGAAACAACAAGAGTGTTTGTGAACAGAAGCATGACTCTTCAAGAATGTGAAGCTATGTGCTTGAAAAATTGCTCTTGCACTGCCTATGCTAATGTTGAGATCACAGATGGAGGAACTGGTTGTGTGATGTGGAGTGATGAACTCTTAGACACGAGGATGTTTTCTGTTGCTGGCCAAGATCTCTTTATCAGATTAGCATCTTCTGATGTAGTTGACATAAACAATGGATCTGGTGGTAGCTCAGGAAAGAACAATAATGTAGGCAAAATAGTAGGCATTACATTTGGTGCTGTTGCTAGTGTAATTTTGGGCTTGAGCTTGTTTCTTTTATGGAAGAAGAGAAAATTGAAAAGTATATGGCAAAGGAAAACCAATCAGAAAGGTTCCTATGAGAGACCTCAGCGCATTGAGAGAGTAATTTCAGCTAGCAGAGAACTCTCAGGTGAACGCACCATGGATGACTTAGAGTTGCCATTGTTTGATTTCACAACACTAACAATGGCCACTAACAACTTCTCTGAAGGAAATAAGCTCGGAGAAGGTGGTTTTGGAAGTGTTTACAGGGGTAGGTTGGTTGAAGGACTAGAGATTGCTGTGAAAAGGTTGTCCAAAAGCTCTGGCCAAGGAAATGAAGAATTCAAGAATGAGGTCAAGTCAATGGCAAAGCTTCAACACAGAAATCTTGTAAGATTGTTTGGTTGCTGCATTGAAAAGGAGGAGCAGATGTTGGTTTATGAATACATGGAAAACAACAGCCTTGAATCTATTTTATTTGACAAAGACAAATGTTGTTTGCTTGACTGGCAAATGCGATTCGATATTATATGTGGAATATCTAGAGGACTTCTTTATCTTCACCAAGACTCCAGACTTAGAATTATCCACAGGGATCTCAAGGCAAGTAATATTCTGCTGGATAGAGAAATGAACCCAAAGATATCGGATTTTGGAATGGCTAGAATTTTCTGCAGCGATCAAACTCAAGCAAACACAAGGAGAGTTGTTGGAACATATGGCTATATGTCGCCAGAATATGCAATGGACGGACTCTTCTCAGTTAAGTCTGATGTTTTCAGTTTTGGCGTTCTTGTGCTAGAGATCATAAGCGGCAAAAAGAACAAAGGATTTTATTCCTCAGAAGAGATAAATCTTCTGGGACATGCATGGAGGTTATGGAAAGAAGGGAGGGCATTAGAACTGATAGATTCATCATTTGGTGATTCCTATTCAGAAACAGAAGTACTGAGATGCATACAAGTTGGGCTGATATGTGTGCAAGAAAGAGCAGAAGATAGACCAACAATATCTTCTGTGGTGTTGATGTTAAGTAGCGAAAATGCATCAATGCCACAGCCTAGAAACCCCGGGTTTGTCCTTGGAAAGAGTCCTGCTGAAACTGTTTCTTCTTCAGCTAATGAAGAAGAATACTCAGTGAACCAAGTCACAATAACAGTAGTAGATGGCAGGTAG 2547 0.404 MSASTNLNVYFFCAFIFSFSSFFNIVTSVDTLTATQSLGINQTLVSSKQVFEFGFFNGTNNSTWYLGIWYKDIPQRTVVWVANRDTPLKDTNGTLKIGARGNLVLLDHAGNAIWSSNETTATNPVLQLLDTGNLILREANKNGAIDGNYLWQSFDYPTDTLLPGMKLGWNLDTGIELYITSWKSQDDPSSGDFSFRMEKLGLPEIFLWNNQVKVHRSGPWNGVRFSEIPVVSSNAVLQDNMSVDSHEVYYILSAINQSKFSRKTVSWNGEIQRLVWVESSQSWKKLWFAPSGECDKYGICGPYGICDSNAFPVCSCIQGFSVKNQTEWDFRDFSNGCVRKTRLDCGRDKFLKLQHVEPPETTRVFVNRSMTLQECEAMCLKNCSCTAYANVEITDGGTGCVMWSDELLDTRMFSVAGQDLFIRLASSDVVDINNGSGGSSGKNNNVGKIVGITFGAVASVILGLSLFLLWKKRKLKSIWQRKTNQKGSYERPQRIERVISASRELSGERTMDDLELPLFDFTTLTMATNNFSEGNKLGEGGFGSVYRGRLVEGLEIAVKRLSKSSGQGNEEFKNEVKSMAKLQHRNLVRLFGCCIEKEEQMLVYEYMENNSLESILFDKDKCCLLDWQMRFDIICGISRGLLYLHQDSRLRIIHRDLKASNILLDREMNPKISDFGMARIFCSDQTQANTRRVVGTYGYMSPEYAMDGLFSVKSDVFSFGVLVLEIISGKKNKGFYSSEEINLLGHAWRLWKEGRALELIDSSFGDSYSETEVLRCIQVGLICVQERAEDRPTISSVVLMLSSENASMPQPRNPGFVLGKSPAETVSSSANEEEYSVNQVTITVVDGR* 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0787 848 ProSiteProfiles PAN/Apple domain profile. 345 425 IPR003609 -
Amo20g0787 848 Pfam PAN-like domain 345 410 IPR003609 -
Amo20g0787 848 ProSiteProfiles Bulb-type lectin domain profile. 29 149 IPR001480 -
Amo20g0787 848 CDD PAN_AP_plant 341 425 - -
Amo20g0787 848 Gene3D Transferase(Phosphotransferase) domain 1 607 812 - -
Amo20g0787 848 SMART ntp_6 345 424 IPR003609 -
Amo20g0787 848 Gene3D - 24 154 IPR036426 -
Amo20g0787 848 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 17 847 - -
Amo20g0787 848 SUPERFAMILY Protein kinase-like (PK-like) 516 833 IPR011009 -
Amo20g0787 848 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 188 IPR036426 -
Amo20g0787 848 ProSitePatterns Protein kinases ATP-binding region signature. 537 559 IPR017441 GO:0005524
Amo20g0787 848 Pfam Protein tyrosine and serine/threonine kinase 534 798 IPR001245 GO:0004672|GO:0006468
Amo20g0787 848 Pfam D-mannose binding lectin 77 183 IPR001480 -
Amo20g0787 848 PIRSF SRK 1 848 IPR024171 GO:0004674
Amo20g0787 848 Pfam S-locus glycoprotein domain 216 323 IPR000858 GO:0048544
Amo20g0787 848 CDD STKc_IRAK 537 801 - -
Amo20g0787 848 ProSiteProfiles Protein kinase domain profile. 531 816 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0787 848 SMART blect_4 35 157 IPR001480 -
Amo20g0787 848 ProSitePatterns Serine/Threonine protein kinases active-site signature. 652 664 IPR008271 GO:0004672|GO:0006468
Amo20g0787 848 SMART serkin_6 531 801 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0787 848 Gene3D Phosphorylase Kinase; domain 1 507 606 - -
Amo20g0787 848 CDD B_lectin 35 157 IPR001480 -
Amo20g0787 848 PANTHER - 17 847 - -
Amo20g0787 848 Pfam Domain of unknown function (DUF3403) 803 848 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0787 Amo-Chr20 11364207 11367949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0787 433 836 Receptor kinase-like Gene Family AT4G23190 51.589 5.63e-135 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo20g0787 PK_Tyr_Ser-Thr 1.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0787 - - aip:107621503 1688.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0787 20 11364207 11367949 Amo20g0787 20 11364207 11367949 ECH
Amo20g0787 20 11364207 11367949 Amo10g0084 10 975893 988555 hybridization
Amo13g4407 13 140038462 140041902 Amo20g0787 20 11364207 11367949 PCT