Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0785 ATGAGAGTCTTCTTCACTCACCTTAACTCCCTCATCATCATTCTTATTTGCTTCTTCTTCATCGCTCCATCAACCTCTTTCGATACTTTAACCGGAACACAAATCCTCAAAACCAACCAAACCTTGTTGTCAGAAAACCAAACCTTCGTTCTAGGATTCTTCGGAGGTTCCAGCACCAACTATTACCTCGGAATATGGTACAACAACATCAGTCCTCAAACAATAGTTTGGGTTGCAAACAGAGACAATCCCATTGACAACTCCGCAGGCCATCTCAAGATCGGAGACAACGGAAACTTTATCCTTCTCAATTCATCGGGGAACCCGGCATGGTCCTCCAACCAAACCAACGCCAAGAATCCAGTTATCCAGCTCCTCGATACCGGCAACCTTGTTCTCAAAGATTTATCAGACACGACAAATAATAACTACTTGTGGCAGAGCTTCGAATACCCAACAGATACCTTGTTACCGGGGATGAAGGTCGGTTGGAACCTCGACACAGGAACGGAGAAGCACTTAACATCATGGAAGGTCGAAGGTGAAGACCCTTCAAGCGGGGACTACACTATGAAGATAGATTACCATGGTTTACCTGAGGCCCTCCTCAGGAGAAACCAAACTATAATATACCGAACTGGTCCTTGGAACGGTGAGAGATTTAGTGGGATCCCAGGGATGAAAGACAACACCAATGATCTCAAGTACAATTTCTCTTATGATGAGCATGGGGTGTGGTTCTCTTTCTCCGTTACAGAACCTTCCTTGTTGTCGAGGATAATTCTGTCATCTGATTCTGATGGCCAGTATCAACGCTACATGTGGATACAAGGAAGATGGAACAAGTTCTCTTACACACCAAAGGATCCATGCGATTACTATAGACAGTGTGGTCCGTATGGAGTGTGTGAGAATGATGCTTCCCCGATTTGCACTTGTATGCAGGGGTTCAGGCCTAAGAACCAAGAAGCTTGGAACTTGAGAGATGGGTCYGATGGGTGTGTGAGGAACACGGTTTTGAATTGTTCGACTGACAAGTTCTTGCATCTTGAGAACATGAAGCTGCCGGAGACAAGCAACGTGTTTATAAATAAGAGTATGACACTTGATGAATGTGGGAGTTTGTGTAAGAGAAATTGTTCATGCACTGCATATGCAAACATCGATATCAGAAATGGAGGAAGTGGCTGTGTCATGTGGTTTGACCAACTCTTTGACATGAATGTCCACCGTCCAGGCGGTCAAGATCTCTATGTCAGATTGGCAGCTGCTGATATAGGATCTACTAGCTCCAACAAGAATCATAGAGCAGTTCTGGCTATTGGCATCACACTTAGTGCACTTGTTTTAGTTTTGGGATTGATTGCTATTTGTTACTTAAGGAAGAAGAGACAACAAAGTTCTAGAGGTGACGAAAGGAACATGGATGATCTAAAATTGCCAATGTTTAATTTTGATACCTTAATGATGGCTACAAACAATTTCTCTCAAGATAATAAACTTGGAGAAGGAGGCTTCGGTAGTGTTTATAGGGGTAGATTGATTGAAGGTCAAGAAATTGCTGTAAAAAGGTTATCAGAAAATTCTGGACAAGGAATTAACGAATTTAAAAATGAAATCAAATTAATTGCCAAACTCCAACATCGAAATCTAGTCCGATTACTTGGTTGCTGCATTGAGAAGAATGAAAAGATGGTGATCTATGAATATATGAAAAATAGAGGACTTGATTCCATTTTGTTTGACAAATCAAAAAATCCCTTGCTTAATTGGGAGAGGCGATTTAATATTATATATGGAATAGCTAGAGGACTTCTTTATTTGCATCAAGATTCAAGATTTCGAATTATTCATAGAGATCTCAAGATAAGTAATATATTACTAGATATTGAAATGAATCCAAAAATATCAGACTTTGGAATGGCTAGAATTTTCGACAACGATCAAACACAAGAAAAAACAATAAGAGTTGTTGGAACATATGGTTATATGTCTCCTGAATATATTATGGATGGAAACTTTTCAATAAAATCTGATATTTATAGCTTTGGAGTTATGATATTGGAAATTATAACTGGGAAGAAAAATAGAGGATTTTCTGGTGACAACGATGAATTGAATCTTTTGGAAAATGTTTGGAGGCGTTGGCACGAAGGAACTATATTGACATTGATTGATCCATCCATTGGCAATTCATATACAGAATCAGAAATCTTAAGATGTATACATGTTGGTCTCTTATGTGTCCAAGAATGTGCAGAAGATAGACCAACAATGTCTTCGGTGATTTTAATGCTGAGTAGTGAAGCTGCATTAATGTCTCGTCCTAGTAATCCAGGGTTTTTTCTAAGAAGAAATCATGCAGAAACATCTTCAAGAAATCAAGATAATACAGAAAGTGTAAATCAAGTTACTGTCACACTACTAAATGCTAGAGTCTTCTTCACTCGCCTTAACTCCCTCATCATCATTCTTATTTGCTTCTTCTTCATCGCTCCATCAACCTCTTTCGATACTTTAACCGGAACACAAATCCTCACAACCAACCAAACCTTGTTGTCAGAAAATCAAACCTTCGTTCTAGGCTTCTTCAGAGGTTCCAACACCAACTATTACCTCGGAATATGGTACAACAACATCAATCCTCAAACAATAGTTTGGGTTGCAAACAGAGACAATCCCATTGACAACTCCAAAGGCTATCTCAAGATCGGAGACAACGGAAACTTTGTCCTTCTCAATTCATCCGGCAACCCCGCATGGTCCTCCAACCAAACCAGCGCCAAGAATCCAGTTCTCCAGCTCCTGGAAACCGGTAACCTTGTTCTCAAAGACTCGGAACAGAGCAATAACTACCTATGGCAGAGCTTCGATTACCCAACAGATACCTTGCTACCTGGGATGAAGTTGGGTTGGAACTTCGACACAGGAATTGAGAAGCACTTAACATCGTGGAAGGTCACAGGTGAAGACCCTTCTTCCGGTGACTACACTTTCAAGCTAGATTACCGCGGTTTACCTGAGATTTTTCTGAGGACAAACCAGACTATCATATACCAAACTGGTCCTTGGAATGGTGAGAGATTCAGCGGGGTTCCAGAGATGGACACCGATACTCATTCCATTGTGTTCAGCTTCTCCGATGACGCGCACGGCGCGTTCTACTCTTTCTCCATCGGGAACGCTTCTTTGTTATCGAGGCTAACGGTGACGTCAGATTCAGACGGAGAACTTCAACGGCGGACGTGGATAGAGAGCAGCGAATCTTGGAACAAGTTCTGGTACAAACCGGCGGATCAATGCGACCATTACAGGGAGTGTGGTCCGTACGGAGTGTGTGACAATAATGCATCGCCGGTTTGCACATGTATGAAAGGGTTCAGCCCTAAGAACCCTCAGGCTTGGAATCTGAGAGATGGATCTGGCGGGTGTGTGAGGAACACGGGTTTGAATTGTTCGACTGACAAGTTCTTGCATCTTGAGAACATGAAGCTGCCGGAGACAAGCAGCGTGTTTATAAATAAGAGTATGACACTTGATGAATGTGGCAGTTTGTGTAAGAGGAATTGTTCATGCACTGCATATGCGAACATTGATATCAGAAACGGAGGAAGTGGCTGTGTTATGTGGATTGGTCAACTCTTTGACATGAATGTCTACCATACAGATGGTCAAGATCTCTATGTCAGATTGGCAGCTGCTGATATAGGATCTACTAGTTCCAGCAAGAATCGTAGAGCTGTTCTAGCTACTGGCATCACACTTAGTGCACTTGTTTTAGTTTTGGGAGTGGTTGCTATTTGTTACTTAAGGAAGAAGAGACAACAAAGTTCTAGAGGTGACGAAAGGAACATGGAAGATCTGAAATTGCCAATGTTTGATTTTGATACCTTAACGATGGCTACAAATAATTTCTCTCAAGATAATAAACTTGGAGAAGGAGGCTTCGGTATTGTTTATAGGGGTAGATTGATTGAAGGTCAAGAAATTGCTATAAAAAGGTTATCAGAAAATTCTGGACAAGGAATTAATGAATTTAAAAATGAAATCAAATTAATTGCCAAACTCCAACATCGAAATCTAGTCCGATTACTTGGTTGCTGCATTGAGAAGAATGAGAAGATGGTGGTCTATGAATATATGGAAAATAGAGGACTTGATTCCATTTTGTTTGACAAATCAAAAAATCTCTTGCTTAATTGGGAGAAGCGTTTTAATATTATATGTGGAATAGCTAGAGGACTTCTTTATTTGCATCAAGATTCAAGATTTCGAATTATTCATAGAGATCTCAAGATAAGTAATATATTACTAGATATTGAAATGAATCCAAAGATATCAGACTTTGGAATGGCTAGAATTTTTGACAAAGATCAAACACAAGAAAATACAGTAAGAATTGTTGGAACATAG 4413 0.4036 MRVFFTHLNSLIIILICFFFIAPSTSFDTLTGTQILKTNQTLLSENQTFVLGFFGGSSTNYYLGIWYNNISPQTIVWVANRDNPIDNSAGHLKIGDNGNFILLNSSGNPAWSSNQTNAKNPVIQLLDTGNLVLKDLSDTTNNNYLWQSFEYPTDTLLPGMKVGWNLDTGTEKHLTSWKVEGEDPSSGDYTMKIDYHGLPEALLRRNQTIIYRTGPWNGERFSGIPGMKDNTNDLKYNFSYDEHGVWFSFSVTEPSLLSRIILSSDSDGQYQRYMWIQGRWNKFSYTPKDPCDYYRQCGPYGVCENDASPICTCMQGFRPKNQEAWNLRDGSDGCVRNTVLNCSTDKFLHLENMKLPETSNVFINKSMTLDECGSLCKRNCSCTAYANIDIRNGGSGCVMWFDQLFDMNVHRPGGQDLYVRLAAADIGSTSSNKNHRAVLAIGITLSALVLVLGLIAICYLRKKRQQSSRGDERNMDDLKLPMFNFDTLMMATNNFSQDNKLGEGGFGSVYRGRLIEGQEIAVKRLSENSGQGINEFKNEIKLIAKLQHRNLVRLLGCCIEKNEKMVIYEYMKNRGLDSILFDKSKNPLLNWERRFNIIYGIARGLLYLHQDSRFRIIHRDLKISNILLDIEMNPKISDFGMARIFDNDQTQEKTIRVVGTYGYMSPEYIMDGNFSIKSDIYSFGVMILEIITGKKNRGFSGDNDELNLLENVWRRWHEGTILTLIDPSIGNSYTESEILRCIHVGLLCVQECAEDRPTMSSVILMLSSEAALMSRPSNPGFFLRRNHAETSSRNQDNTESVNQVTVTLLNARVFFTRLNSLIIILICFFFIAPSTSFDTLTGTQILTTNQTLLSENQTFVLGFFRGSNTNYYLGIWYNNINPQTIVWVANRDNPIDNSKGYLKIGDNGNFVLLNSSGNPAWSSNQTSAKNPVLQLLETGNLVLKDSEQSNNYLWQSFDYPTDTLLPGMKLGWNFDTGIEKHLTSWKVTGEDPSSGDYTFKLDYRGLPEIFLRTNQTIIYQTGPWNGERFSGVPEMDTDTHSIVFSFSDDAHGAFYSFSIGNASLLSRLTVTSDSDGELQRRTWIESSESWNKFWYKPADQCDHYRECGPYGVCDNNASPVCTCMKGFSPKNPQAWNLRDGSGGCVRNTGLNCSTDKFLHLENMKLPETSSVFINKSMTLDECGSLCKRNCSCTAYANIDIRNGGSGCVMWIGQLFDMNVYHTDGQDLYVRLAAADIGSTSSSKNRRAVLATGITLSALVLVLGVVAICYLRKKRQQSSRGDERNMEDLKLPMFDFDTLTMATNNFSQDNKLGEGGFGIVYRGRLIEGQEIAIKRLSENSGQGINEFKNEIKLIAKLQHRNLVRLLGCCIEKNEKMVVYEYMENRGLDSILFDKSKNLLLNWEKRFNIICGIARGLLYLHQDSRFRIIHRDLKISNILLDIEMNPKISDFGMARIFDKDQTQENTVRIVGT* 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0785 1470 CDD STKc_IRAK 501 766 - -
Amo20g0785 1470 SMART ntp_6 342 421 IPR003609 -
Amo20g0785 1470 SMART ntp_6 1152 1231 IPR003609 -
Amo20g0785 1470 Pfam Domain of unknown function (DUF3403) 768 812 IPR021820 GO:0004674
Amo20g0785 1470 ProSiteProfiles Protein kinase domain profile. 495 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0785 1470 ProSiteProfiles PAN/Apple domain profile. 342 422 IPR003609 -
Amo20g0785 1470 CDD B_lectin 843 960 IPR001480 -
Amo20g0785 1470 ProSiteProfiles EGF-like domain profile. 1097 1133 IPR000742 -
Amo20g0785 1470 Pfam PAN-like domain 1152 1217 IPR003609 -
Amo20g0785 1470 Pfam PAN-like domain 342 407 IPR003609 -
Amo20g0785 1470 ProSitePatterns Protein kinases ATP-binding region signature. 1311 1333 IPR017441 GO:0005524
Amo20g0785 1470 Pfam D-mannose binding lectin 74 178 IPR001480 -
Amo20g0785 1470 Pfam D-mannose binding lectin 884 986 IPR001480 -
Amo20g0785 1470 ProSiteProfiles Protein kinase domain profile. 1305 1470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0785 1470 ProSiteProfiles Bulb-type lectin domain profile. 837 956 IPR001480 -
Amo20g0785 1470 ProSiteProfiles EGF-like domain profile. 287 323 IPR000742 -
Amo20g0785 1470 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 12 811 - -
Amo20g0785 1470 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 822 1470 - -
Amo20g0785 1470 SMART blect_4 33 152 IPR001480 -
Amo20g0785 1470 SMART blect_4 843 960 IPR001480 -
Amo20g0785 1470 SMART serkin_6 495 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0785 1470 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 218 IPR036426 -
Amo20g0785 1470 Gene3D Phosphorylase Kinase; domain 1 1279 1380 - -
Amo20g0785 1470 Pfam Protein tyrosine and serine/threonine kinase 497 762 IPR001245 GO:0004672|GO:0006468
Amo20g0785 1470 Pfam Protein tyrosine and serine/threonine kinase 1307 1461 IPR001245 GO:0004672|GO:0006468
Amo20g0785 1470 Gene3D Hepatocyte Growth Factor 1151 1232 - -
Amo20g0785 1470 Gene3D Hepatocyte Growth Factor 337 419 - -
Amo20g0785 1470 Gene3D Phosphorylase Kinase; domain 1 456 570 - -
Amo20g0785 1470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1426 1438 IPR008271 GO:0004672|GO:0006468
Amo20g0785 1470 CDD PAN_AP_plant 1150 1232 - -
Amo20g0785 1470 SUPERFAMILY Protein kinase-like (PK-like) 478 766 IPR011009 -
Amo20g0785 1470 ProSiteProfiles PAN/Apple domain profile. 1152 1232 IPR003609 -
Amo20g0785 1470 Pfam S-locus glycoprotein domain 211 321 IPR000858 GO:0048544
Amo20g0785 1470 Pfam S-locus glycoprotein domain 1019 1131 IPR000858 GO:0048544
Amo20g0785 1470 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Amo20g0785 1470 CDD PAN_AP_plant 338 422 - -
Amo20g0785 1470 SUPERFAMILY Protein kinase-like (PK-like) 1287 1470 IPR011009 -
Amo20g0785 1470 PANTHER - 12 811 - -
Amo20g0785 1470 PANTHER - 822 1470 - -
Amo20g0785 1470 ProSitePatterns Protein kinases ATP-binding region signature. 501 523 IPR017441 GO:0005524
Amo20g0785 1470 Gene3D - 24 149 IPR036426 -
Amo20g0785 1470 Gene3D - 834 957 IPR036426 -
Amo20g0785 1470 SUPERFAMILY alpha-D-mannose-specific plant lectins 884 1026 IPR036426 -
Amo20g0785 1470 CDD B_lectin 33 152 IPR001480 -
Amo20g0785 1470 Gene3D Transferase(Phosphotransferase) domain 1 1381 1470 - -
Amo20g0785 1470 Gene3D Transferase(Phosphotransferase) domain 1 571 776 - -
Amo20g0785 1470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0785 Amo-Chr20 11331168 11340484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0785 406 812 Receptor kinase-like Gene Family AT4G21410 49.883 1.66e-121 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo20g0785 PK_Tyr_Ser-Thr 4.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0785 - - mesc:110602854 1479.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0785 20 11331168 11340484 Amo20g0785 20 11331168 11340484 ECH