Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0781 ATGGAGAGAAGAACACACTTGAACCTTTCTTTTTCATTTCTTGTCACTTTTTGCTACTTCTTCATAGCCATTTTTGCAACATTTTTGGAAGCATATGATACCTTAAGTCCACCAAAAACCATCACTGGCAACAAAACACTAGTCTCACCTTCCCAGAATTTTGAACTAGGTTTCTTTAATCTTGGTAGCAACTCCACTCGCAGATATCTTGGGATATGGTACAAAAATGTTCCTAAGAAAACTGTTATTTGGGTTGCAAATAGAGACAATCCACTTGCTCATGATTTTGGTGATGATGGATCCTTAACATTCAGCAATGATGGGAAACTCATAGTTCACAGCCACAAAGGAAGTGTTATATGGTCTTCAAATTCTTCTAGACCTGCAAGAAATCCAGTGGCACAGCTTCTAGACACTGGAAATCTTGTTCTTAAAGATATTGATGGAAGAAGCTCTGAGGAATATATATGGCAGAGTTTTGATTATCCATGTGACACATTGGTGCCAGGGATGAGACTTGGTTGGAGATTCAAAACCGGCTTGAACCGGCATTTGAGTTCTTGGAAGAGCAATGATGATCCTTCTAATGGAGACTACACCTACAGTGTTGACCCTCGTGGAATTCCTCAGCTTTTTCTAAACAAGAGGAGCAAGAAAATCTTCAGAAGTGGACCATGGTATGGGCAACAGTTCAAAGGTGATCCAGTTCTCAGTTCAAATCCGGTTTTCAAAGCAGTATTTGTTTTTGATTCTGATGAAGTTTCTTACTCCTATGAGGCTAAGGACAACATGATCTCGAGGTTCGTGCTTACGCCATCCGGTTCCATTCGCCATTTCTCTTGGAATGATCACAAGTCAAGCTGGGTTTCTGAGTTCTCAGTCCAAGGGGACCATTGTGATGATTATGCCCTTTGTGGTGCTTATGGAAGTTGCAGCATTGTTAAGAGCTCTTCCCCTAGTTGCAAGTGTTTGAAGGGTTTTGAGCCTAGAAAATCTCAAGATTGGTCAAGTGGATGTCTGAGGGAGGATTCAAAGGGTTGCAAAAGTGGAGGAGACTCATTTGAGAAGCTTACAGGGTTGAAACTACCAGATTCTGCAGAGTTTCATGCAAACTATAGCATTAGCATTAATCACTGTGAGGCAGAATGCTTGAAGAATTGTTCTTGTGTAGCTTATGCTAAATTAGATGTGAATGCAAGTGGCAAAGGATGTGTTACTTGGTTTGGAGATTTGTTTGATATTAGAGAGGCTCCTGTGTATGGTCAAGATCTCTATGTCAGAGTTTCAGCTTCACAACTAGATTCAAATGCTGCTAGAAACAAAAAGAAGATATTCATACTGCTTCCTGTGGCAGTATCCTTAACTTCAACAATTGTTGTTTTAGCTTTGTGGTTCATAATCAAGACATGGCAAAGAAATGGAGTTGAAAAAGAGGACCTTCAATTTAATGATGGAAGAGGTAGTAGGAGTGAGAGGAATGAATATGAACTCCCATTATTTGAGATTGCCATCATTGAAGCTGCAACTATGAATTTCTCTGTTTACAACAAGATTGGAGAAGGTGGATTTGGTCTTGTATACAAGGGTGAACTTCCATCAGGACAAGAAATAGCAGTGAAGAAACTCTTGGAAAGTTCTGGACAAGGTCTGCAGGAGTTCAAGAATGAGGTGATTTTGATCTCCCAACTTCAGCACCGAAATCTTGTAAAGCTTCTTGGCTGCTGCATTCATGGAGAAGACAAGATGTTGGTCTATGAATACATGCCAAACAAAAGCTTGGACTCATTATTATTTGATGAAACCAAGCGTCCTGTCCTCAATTGGCAAAAGAGGCTAGACATTATCATTGGTATCGCCAGAGGGCTTCTATACCTTCATAGAGATTCAAGGCTAAGAATAGTCCATAGAGACCTAAAAGCAAGTAATGTTCTTTTAGATATTAACATGAATCCAAAGATTTCCGACTTTGGAATGGCTAGAATGTTTGGTGGAGATCAAACTGAAGCAATGACCAAGAGAGTGGTTGGAACCTACGGATATATGTCGCCGGAGTATGCAATAGACGGTCAATTCTCTTTTAAATCAGATGTCTTTAGCTTCGGTGTTTTACTGTTGGAAATATTGAGCGGCAAGAGAAACAAAGGATTCTTGCACCCGGATCACAAACTCAATCTTTTAGGCCATGCATGGAAGCTCTGGAATGAAGGTAAAGCATTAGAGCTGATGGATGGTTTACTTGAGAATGAGTTTCCTAACTCTGAAGCTCTAAGGTGTATACAAGTGGGACTCTCATGCGTTCAACACCGCCCAGAAGACAGGCCAACAATGTCACTAGTTCTTGTGATGTTGGACAGTGAGAGTACAGTGCTGCCACAACCTGGAAGACCAGGATTATATTCAGAGAGATTTTTTTCAGAGACAGATTCAACTTCACTTGCTAGACTCAACTCTAGTTCCAATCACATCAATGTCACCTTAGTAGAGGGTCGTTAA 2493 0.4051 MERRTHLNLSFSFLVTFCYFFIAIFATFLEAYDTLSPPKTITGNKTLVSPSQNFELGFFNLGSNSTRRYLGIWYKNVPKKTVIWVANRDNPLAHDFGDDGSLTFSNDGKLIVHSHKGSVIWSSNSSRPARNPVAQLLDTGNLVLKDIDGRSSEEYIWQSFDYPCDTLVPGMRLGWRFKTGLNRHLSSWKSNDDPSNGDYTYSVDPRGIPQLFLNKRSKKIFRSGPWYGQQFKGDPVLSSNPVFKAVFVFDSDEVSYSYEAKDNMISRFVLTPSGSIRHFSWNDHKSSWVSEFSVQGDHCDDYALCGAYGSCSIVKSSSPSCKCLKGFEPRKSQDWSSGCLREDSKGCKSGGDSFEKLTGLKLPDSAEFHANYSISINHCEAECLKNCSCVAYAKLDVNASGKGCVTWFGDLFDIREAPVYGQDLYVRVSASQLDSNAARNKKKIFILLPVAVSLTSTIVVLALWFIIKTWQRNGVEKEDLQFNDGRGSRSERNEYELPLFEIAIIEAATMNFSVYNKIGEGGFGLVYKGELPSGQEIAVKKLLESSGQGLQEFKNEVILISQLQHRNLVKLLGCCIHGEDKMLVYEYMPNKSLDSLLFDETKRPVLNWQKRLDIIIGIARGLLYLHRDSRLRIVHRDLKASNVLLDINMNPKISDFGMARMFGGDQTEAMTKRVVGTYGYMSPEYAIDGQFSFKSDVFSFGVLLLEILSGKRNKGFLHPDHKLNLLGHAWKLWNEGKALELMDGLLENEFPNSEALRCIQVGLSCVQHRPEDRPTMSLVLVMLDSESTVLPQPGRPGLYSERFFSETDSTSLARLNSSSNHINVTLVEGR* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0781 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 82 194 IPR036426 -
Amo20g0781 830 Pfam Protein tyrosine and serine/threonine kinase 514 780 IPR001245 GO:0004672|GO:0006468
Amo20g0781 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Amo20g0781 830 Gene3D Phosphorylase Kinase; domain 1 477 587 - -
Amo20g0781 830 SMART blect_4 38 163 IPR001480 -
Amo20g0781 830 CDD STKc_IRAK 518 784 - -
Amo20g0781 830 ProSiteProfiles Protein kinase domain profile. 512 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0781 830 ProSiteProfiles EGF-like domain profile. 295 333 IPR000742 -
Amo20g0781 830 Pfam PAN-like domain 347 414 IPR003609 -
Amo20g0781 830 CDD PAN_AP_plant 347 429 - -
Amo20g0781 830 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 23 828 - -
Amo20g0781 830 Pfam S-locus glycoprotein domain 221 330 IPR000858 GO:0048544
Amo20g0781 830 ProSiteProfiles Bulb-type lectin domain profile. 32 157 IPR001480 -
Amo20g0781 830 SMART ntp_6 349 428 IPR003609 -
Amo20g0781 830 CDD B_lectin 40 163 IPR001480 -
Amo20g0781 830 ProSitePatterns Protein kinases ATP-binding region signature. 518 541 IPR017441 GO:0005524
Amo20g0781 830 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 23 828 - -
Amo20g0781 830 PIRSF SRK 4 830 IPR024171 GO:0004674
Amo20g0781 830 SMART serkin_6 512 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0781 830 Gene3D Transferase(Phosphotransferase) domain 1 588 790 - -
Amo20g0781 830 Pfam D-mannose binding lectin 81 189 IPR001480 -
Amo20g0781 830 Gene3D - 28 160 IPR036426 -
Amo20g0781 830 SUPERFAMILY Protein kinase-like (PK-like) 496 800 IPR011009 -
Amo20g0781 830 ProSiteProfiles PAN/Apple domain profile. 347 429 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0781 Amo-Chr20 11290783 11293967 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0781 428 798 Receptor kinase-like Gene Family AT4G05200 52.116 1.50e-124 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Amo20g0781 PK_Tyr_Ser-Thr 4.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0781 - - adu:107468578 1665.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0781 20 11290783 11293967 Amo10g0079 10 864138 869173 hybridization
Amo13g4410 13 140112245 140116227 Amo20g0781 20 11290783 11293967 PCT