Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0780 ATGGCGGCTCAGCTACCAGAACACTTCAAGTGTCCGATTTCACTCGAAATAATGTCCGACCCAGTCATACTCTCCTCCGGCCACACATTCGACCGCTCCTCCATACAGCGCTGGCTCGATGCAGGCCACCGCACCTGCCCAATTACCAAACTGCCCCTCCCGGATCATGCCTCCCTCATCCCCAACCACGCCCTCCGCAGCCTCATTTCCAACTTTACCCCTCTCACTCCAACTCCAATTCCAATCCCTCACCTCCCCACCCCCAACCCCGAAAACCCTAATCTCTTCCTCACCTCCTCCGCTTCCCTCTCTTCCTCCAAGCTTGATCGCTCCACCAACTCACTCGACTCGCCAAGCGCGATTCGCTCTTCCGCCGCCGTCTCACCGACTCGGGAATCGTCCCGCCGCTACTCTCCTGCGTCGACTCCCACGACCACGATTCCCTCCGCGAGAACGCTCTCTCTTTGCTCTCATTCTCAGCCTCGACGACCACAACAAGGTTGGACTCGTCGCGAGGGAGTCGTTGCCCCCTCGTCGCCGTCATCTCCGGAACGGCTGCAGGAAATCCATCCCCGGACTGCCGCGCGCTCGCAGCCACAACACTCACAAGCCTGGCCGTCGTGGAGGTCAACAAGGCCACAATCGGCGCGTACCCTCACGCGATCGAGTCACTCGTGGCCTCGTAAGGGACGGAAAGAGGGAGAGAGAAAGAAGGAAGCAGCGACGGCGCTCTATGCTCTCTGCTCCTTCCCGGACAACCGGCGGAGGGCGGTGGAGTGCGGCGCGGTGCCTGTTCTTCTCCGGAGCGTGGATTGCGGCTTGGGGAGGGGGCCGTTGATATGTGTTTGTTGGAGTTCTTTGCCAAAGTGTAAGGAAGGGAGGGAACAGATGGAGAGGTTCCATGGATGCGTTCAGATTCTGAGTCGGGTTCTGAGGAATGGAAGCTCAAGAGGGGTTCAGTATGCTCTCTTGGCTCTTAACTCGTTGTGTTGTGGCAGTGAAGTTGCTTCTATGGAAGCCATCAGAGAAGGCCTTTTGGAAACATGTCTTGGCTTTCTGGAAAGATTAACCGAGAAAGTGAGAAGGAATGCTTTTCGCTTTGCTTCAGAATCTGCGTGGCAACAATGGATCAGCTGA 1137 0.5734 MAAQLPEHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDHASLIPNHALRSLISNFTPLTPTPIPIPHLPTPNPENPNLFLTSSASLSSSKLDRSTNSLDSPSAIRSSAAVSPTRESSRRYSPASTPTTTIPSARTLSLCSHSQPRRPQQGWTRREGVVAPSSPSSPERLQEIHPRTAARSQPQHSQAWPSWRSTRPQSARTLTRSSHSWPRKGRKEGERKKEAATALYALCSFPDNRRRAVECGAVPVLLRSVDCGLGRGPLICVCWSSLPKCKEGREQMERFHGCVQILSRVLRNGSSRGVQYALLALNSLCCGSEVASMEAIREGLLETCLGFLERLTEKVRRNAFRFASESAWQQWIS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0780 378 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Amo20g0780 378 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
Amo20g0780 378 MobiDBLite consensus disorder prediction 106 237 - -
Amo20g0780 378 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Amo20g0780 378 Gene3D - 219 373 IPR011989 -
Amo20g0780 378 MobiDBLite consensus disorder prediction 193 223 - -
Amo20g0780 378 SUPERFAMILY ARM repeat 237 366 IPR016024 -
Amo20g0780 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 74 IPR013083 -
Amo20g0780 378 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 233 364 - -
Amo20g0780 378 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 109 - -
Amo20g0780 378 MobiDBLite consensus disorder prediction 106 166 - -
Amo20g0780 378 SUPERFAMILY RING/U-box 3 72 - -
Amo20g0780 378 CDD RING-Ubox_PUB 9 50 IPR045210 -
Amo20g0780 378 PANTHER U BOX DOMAIN-CONTAINING 2 109 - -
Amo20g0780 378 PANTHER U BOX DOMAIN-CONTAINING 233 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0780 Amo-Chr20 11276895 11278031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0780 1 72 U-box Gene Family AT4G21350 76.389 4.87e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0780 - - zju:107421885 283.108