Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0777 ATGGGAAATTGGGAATGTGGTAAGAGTAACCACTCTCGTTGGTGGTCACCATCACGGTCACCACCTGAAACTGAAACRGAATCGGGATCAAGCAAGAGGAGCCAGCTTAGAATGACGAATTCTAACGAGGTAGAGAATCACAGAAACAGCGTCGGCGTCGTCACAAAACCAACGAAGAAGATCAACAGAGAGGAGAAAGGCGAGTCCTCCTCCATTTCCTCGTTCGTGTGCGAAATCTGCATTGAGACTAAAACCGAAGCGGAATCTTTCACCATAAGTGGTTGCACACACTCGTATTGTACGGATTGCGTGGTGAAGTACGTTTGTTCTAAGCTCGACGACAACGTGATCAATATCCGGTGTCCGGTMCCCCGGTGCCYTGGTCTATTGGAAACCAATGGTTGCCGCGAGATTCTGCCAAAGTCGGTATTGCATCGGTGGGAGAAGTCATTGCGTGAAGCTGCTGTTCTTGAGAGCGAGAGCAAGAGATTCCTATATAGTGATGATGTTAGCGAGAGGAACGGGTGGAAGAGGTGCCCAAATTGCAGGTTCTACGTTGAGAAGGAACCTTTGACGTGCAATGCAATACTTTGCAGGTGTGGACAAGTCTTCTGCTACGACTGTGGCGGTTCCACCTGTGTCAATGTCACTACTCATCAATTAGGCCGTCCCTTCCGTCCCCCCGCCTGCCGTCTTCCATCATGGGCTATTGGTCTGTCAATTCTATTTGGATTTATCATTCCTTTCCTATGTTTGGATGAAACTCACCAATGA 774 0.4845 MGNWECGKSNHSRWWSPSRSPPETETESGSSKRSQLRMTNSNEVENHRNSVGVVTKPTKKINREEKGESSSISSFVCEICIETKTEAESFTISGCTHSYCTDCVVKYVCSKLDDNVINIRCPVPRCXGLLETNGCREILPKSVLHRWEKSLREAAVLESESKRFLYSDDVSERNGWKRCPNCRFYVEKEPLTCNAILCRCGQVFCYDCGGSTCVNVTTHQLGRPFRPPACRLPSWAIGLSILFGFIIPFLCLDETHQ* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0777 257 ProSiteProfiles TRIAD supradomain profile. 73 257 IPR044066 -
Amo20g0777 257 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 32 164 - -
Amo20g0777 257 SUPERFAMILY RING/U-box 164 211 - -
Amo20g0777 257 Pfam Zinc finger, C3HC4 type (RING finger) 77 122 IPR018957 GO:0046872
Amo20g0777 257 Pfam IBR domain, a half RING-finger domain 162 210 IPR002867 -
Amo20g0777 257 ProSitePatterns Zinc finger RING-type signature. 95 104 IPR017907 -
Amo20g0777 257 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 174 212 - -
Amo20g0777 257 ProSiteProfiles Zinc finger RING-type profile. 77 125 IPR001841 -
Amo20g0777 257 MobiDBLite consensus disorder prediction 1 53 - -
Amo20g0777 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 70 157 IPR013083 -
Amo20g0777 257 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 174 212 IPR031127 GO:0004842|GO:0016567
Amo20g0777 257 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 32 164 IPR031127 GO:0004842|GO:0016567
Amo20g0777 257 SUPERFAMILY RING/U-box 74 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0777 Amo-Chr20 11231570 11233362 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0777 45 208 C3H Transcription Factor Family AT2G31770 23.214 1.14e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0777 K11975 - aip:107607785 154.066