Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0776 ATGACGAATTCTAACGCTGTAGAGAATCACAGAAACAACGTCGGCGTCGCCACAAAACAAACGAAGAAGATCAACAGAGAGGAGAAAGGCAAGTCCTCATCGATTTCCTCGTTCGTGTGCGAAATCTGCATTGTGACTAAAACCGAAGCGGAATCTTTCACCATAAGTGGTTGCACACACTCGTATTGTACGGATTGCGTGGTGAAGTACGTTTGTTCTAAGCTCGACGACAACGTGATCAATATCCGGTGTCCGGTGCCCCGGTGCCGTGGTCTATTGGAAACCAATGGTTGCCGCGAGATTCTGCCAAAGTCGGTATTGCATCGGTGGGAGAAGTCATTGCGTGAAGCTGCTGTTCTTGAGAGCGAGAGCAAGAGATTCCTGTATGACCGCCGCTCCAACGATGGTCCACACCCTAGGCAGATGTGCGTCACGTGCACGGATGAAGATAGAATGATGATGAAGTTAGCGGAGAGGAACGGGTGGAAGAGGTGCCCAAAGTGCAGGTTCTACGTTGAGAAGAAACCTTTCACGTGCAGTAGAATACTTTGCAGGTGTGGACATGTCTTCTGCTATGGCTGTGGCGGTTCCCCCTGTGGCGGTTCCCCCTGTGTCGGTTCCACCTGTGGCGGTTCCGCCTTCTTTCCTCCATCATGGTTTATTGCACCTTAA 672 0.5089 MTNSNAVENHRNNVGVATKQTKKINREEKGKSSSISSFVCEICIVTKTEAESFTISGCTHSYCTDCVVKYVCSKLDDNVINIRCPVPRCRGLLETNGCREILPKSVLHRWEKSLREAAVLESESKRFLYDRRSNDGPHPRQMCVTCTDEDRMMMKLAERNGWKRCPKCRFYVEKKPFTCSRILCRCGHVFCYGCGGSPCGGSPCVGSTCGGSAFFPPSWFIAP* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0776 223 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 29 127 IPR031127 GO:0004842|GO:0016567
Amo20g0776 223 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 147 196 IPR031127 GO:0004842|GO:0016567
Amo20g0776 223 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 29 127 - -
Amo20g0776 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 120 IPR013083 -
Amo20g0776 223 ProSiteProfiles TRIAD supradomain profile. 36 223 IPR044066 -
Amo20g0776 223 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 147 196 - -
Amo20g0776 223 SUPERFAMILY RING/U-box 149 200 - -
Amo20g0776 223 SUPERFAMILY RING/U-box 37 117 - -
Amo20g0776 223 ProSiteProfiles Zinc finger RING-type profile. 40 88 IPR001841 -
Amo20g0776 223 ProSitePatterns Zinc finger RING-type signature. 58 67 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0776 Amo-Chr20 11211719 11212574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0776 33 210 ARIADNE family AT3G27710 22.222 2.59e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0776 K11975 - dcr:108211421 152.525