Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0774 ATGGCCGAGGAGTTTCAAGCTACAATTTGTGGTGATAACTATTGGTGGAACTCAAATAGAAGTTTGTTCTCTTTGATGGGGGGATCAATGACGTGTTCTGTAGCAGCTGCTAATGATTCAGCAAACAATTATGGCTCTTTCTGGCAAGGTTCTGATTTCATGGATTTCAAGGGAGCAACAACAAAATCTTCTTTTAAAGAAGAAGATACAGACAAGTGTAGTAATAATGAATCATCAATATCAGCAGCAGTAGCAGGTGGAACCGTTGGGAGTATCTTCATCAATTCCACCTCACAAATGATGAGTTATGGCCTCTCATCTTCACCATCATCCCCTTGGAATAATCCTTCTCTATTTGGTTGTAATGAAAGGTCAGAAAACAATTTCCAATCTGTTGTGCTTCAAGAAGAAACGGGATTAGATCCTTCTAGTAATAACTCACAACAGATCCAGCAACAGCAAGAATTTTCGAGTTCCATGGGTGGTGGATTTACAGTTGAATCATCATTATCTGCATCTCATGATTACCCCTTGATGCAAGCAGGACTATTTGGTTCGACTGACTCATCATCATCACTCTTCACAACTAACCAACCAACCCTTCCTGAACTGTCACCAATATGGTCTACGGTGTCTTCCTTTARGAAGCCTTCATCATTTATGGAGCCAAAGCAACTTAATGGATTGCAATTCTCAAARAATACTCCTTTCTGTAATGCTTCAACTGAAGAGACACTTTATAYTATAAGATCTGATATCTTTTCTTCGTCTTCTTCTCAACCACAGCTATATCAAACARCACCAACAACTTTTGATAATAGCAAACCCAATAATGCTCTAACTAGTACTCCACTCAACAAGTTGAAGAGAGAAGAATCTCCAGAAAAAGCATCATCATCAGTCTGTAGCAAAAATGTTTCTGGGCGCGTCTTCAAAAAAGCAAGAATTGAAACGCCATCTCCTTTGCCTACTTTTAAGGTTCGAAAAGAAAAGTTAGGGGACCGAATTACTGCTCTTCAGCAATTGGTATCACCTTTTGGAAAGACGGACACTGCATCGGTTCTACATGAAGCCATTGAGTACATCAAATTTCTTCATGATCAAGTCAATGTTTTAACTGCTCCATATATGAAAAATGGGTCTTCCATTCAAGATCAACAGGGATGTGATTATGAAAAGGATTCAAAATGTTTAACGCAAGATTTGAGTAGTCGAGGGCTTTGTTTGGTACCAGTTGCAAGCACATTTCCGATGGCTACTGAGACCACCGCTGATTTTTGGACGCCTACATTTGGAGACTCACTCATCGGCAATGTGGCAGGTAGTCATCAATGA 1335 0.3955 MAEEFQATICGDNYWWNSNRSLFSLMGGSMTCSVAAANDSANNYGSFWQGSDFMDFKGATTKSSFKEEDTDKCSNNESSISAAVAGGTVGSIFINSTSQMMSYGLSSSPSSPWNNPSLFGCNERSENNFQSVVLQEETGLDPSSNNSQQIQQQQEFSSSMGGGFTVESSLSASHDYPLMQAGLFGSTDSSSSLFTTNQPTLPELSPIWSTVSSFXKPSSFMEPKQLNGLQFSKNTPFCNASTEETLYXIRSDIFSSSSSQPQLYQTXPTTFDNSKPNNALTSTPLNKLKREESPEKASSSVCSKNVSGRVFKKARIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLTAPYMKNGSSIQDQQGCDYEKDSKCLTQDLSSRGLCLVPVASTFPMATETTADFWTPTFGDSLIGNVAGSHQ* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0774 444 CDD bHLH_AtbHLH_like 322 372 IPR045239 -
Amo20g0774 444 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 57 421 - -
Amo20g0774 444 PANTHER TRANSCRIPTION FACTOR BHLH103 57 421 - -
Amo20g0774 444 MobiDBLite consensus disorder prediction 259 287 - -
Amo20g0774 444 Gene3D - 326 387 IPR036638 GO:0046983
Amo20g0774 444 MobiDBLite consensus disorder prediction 130 162 - -
Amo20g0774 444 MobiDBLite consensus disorder prediction 259 298 - -
Amo20g0774 444 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 316 365 IPR011598 GO:0046983
Amo20g0774 444 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 326 378 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0774 Amo-Chr20 11182955 11185772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0774 1 432 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 36.142 3.38e-54 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0774 - - adu:107468661 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0774 20 11182955 11185772 Amo10g0067 10 710345 713015 hybridization
Amo13g4433 13 140351632 140354944 Amo20g0774 20 11182955 11185772 PCT
Amo20g0774 20 11182955 11185772 Amo13g4433 13 140351632 140354944 PCT