Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0755 ATGGGTTCATCGGAAAACCCCAATTGGGTTCTGGACTACGCATATCTCGATGACATTCACTCTCTTTCTGACCCTTCCAACTTCTCTTGGCCCCCTCCTCCAACCTCCCTAAGTGCCGACCTTCATCAATCGCTTCCCAATTCTCATGGACCCGATCAATCTGCCTCAAGAAAACGCTTGAGGTCATCTGGTTCAAAAGCGTGTAGAGAGAAAATGCGAAGGGATAGATTGAATGACAGATTTTTGGAACTTGGTTCCATTTTGGACCCCGGAAGGCCTCCCAAAACGGACAAGGCTGCTATACTGAGTGACGCGGTTCAACTGGTGTCGCAGCTGCGAGGGGAGGCTCAGAAGCTTAAAGAATCAACTGAGAATCTGCAGGAGAAAATCAATGAATTGAAGGCCGAGAAAAATGAGCTCCGTGACGAGAAGCAACGGCTAAAAGCAGAGAAAGATAGCCTTGAGAAGCAGCTCAAAGCCTTGAATACACCACCTGGTTTCCTGCACCATCCTCCTACACTTCCAGCTGTTTTCCCTCATGCACCAGGGCAAGTTCTTGGAAGCAAGCTGGTGCCTTTCATGGGCTACCCAGGAGTTTCCATGTGGCAGTTTTTACCACCTGCTGCTGTCGACACATCGCAGGACCATGTACTCCGGCCCCCGGTTGCATAA 672 0.5 MGSSENPNWVLDYAYLDDIHSLSDPSNFSWPPPPTSLSADLHQSLPNSHGPDQSASRKRLRSSGSKACREKMRRDRLNDRFLELGSILDPGRPPKTDKAAILSDAVQLVSQLRGEAQKLKESTENLQEKINELKAEKNELRDEKQRLKAEKDSLEKQLKALNTPPGFLHHPPTLPAVFPHAPGQVLGSKLVPFMGYPGVSMWQFLPPAAVDTSQDHVLRPPVA* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0755 223 PANTHER BHLH TRANSCRIPTION FACTOR 2 223 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Amo20g0755 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 67 137 IPR036638 GO:0046983
Amo20g0755 223 CDD bHLH_AtILR3_like 66 141 - -
Amo20g0755 223 Coils Coil 102 164 - -
Amo20g0755 223 MobiDBLite consensus disorder prediction 24 74 - -
Amo20g0755 223 Pfam Helix-loop-helix DNA-binding domain 65 112 IPR011598 GO:0046983
Amo20g0755 223 Gene3D - 61 141 IPR036638 GO:0046983
Amo20g0755 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 112 IPR011598 GO:0046983
Amo20g0755 223 PANTHER TRANSCRIPTION FACTOR ILR3-LIKE 2 223 - -
Amo20g0755 223 SMART finulus 67 118 IPR011598 GO:0046983
Amo20g0755 223 MobiDBLite consensus disorder prediction 33 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0755 Amo-Chr20 10881683 10883104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0755 1 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 58.120 5.99e-89 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo20g0755 HLH 3.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0755 - - mnt:21402686 311.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0755 20 10881683 10883104 Amo10g0049 10 544974 546308 hybridization