Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0728 ATGTTGAGTTTTGTTCCAATTCATATATTCTTGTGGTCATTATTGTTCTGTTTCTTCATGATTGTTTATGGAGCTGAATTAGGTGACATCAATTGCCTAAGAGAAATCAACAACTCATCGGACTCATCTAATCAAATATGGGATTTCAATTTCAATATCAACACCATAGATTTGTGCTCATCATTCACTGGTATTGAATGCATGAACAGTGGTATTGATGAAGAAAAAGTAATAAGTCTCAAGCTTTCCAACATGGGGTTAGAAGGCCAATTTCCTCATTGCATTGAGAATTTCTCATGGCTGCAGAATCTGAACCTTTCACACAACAAGCTCTTTGGGAATATCCCACCTGATATTTCAAGTAAGCTTCCATATCTAACCTCACTTGACCTATCAAACAACAACTTTTATGGGGAAATCCCAAAGGCTATTGCAAACTTGTCTTACTTGAATACCCTTAGACTTGATGGTAACCAGTTAAAAGGAACAATCCCAAAAGAACTTGGCTTTCTTCCAAGGATCACAGTGTTCAGTGTTGCAAACAATTTGTTATCAGGGCCAGTGCCTGTGTTTGTGAACAATAATGTTGATGTTAGCTTGAGCTATGTCAATAATAGTGGACTCTGTGGGGGAACAACATTGGGAAGTTGTGATGAAGAGAGCTTATTTGGTAAACCCTTTTGGTATAGTTTTGTTATTGCTTTTGTTTGTTCAGCAACTTCTGTCATAGTAACTTTCATGGACTATACTCAACCTTGGAAAGAATTCAAAAAGAGTAGTAAGAAGAGTAACACCATATATCCCTTGAGAAAAGAACTGAACAATCAAAAGCATACCACTAATGTAGCTCAATTGCTTCCACTGGCTTTGCAAGAGGAAGGAAATAAAGAGCTCTGTAGATTGTTGGAGAGATTGATACCAAGAATGAGCTTCATGGAGCTTTGCAAAGCAACTAACTACTTTAGCTCAAACAACATCATGGGGTTAGGAACAACAGGGATAATGTACAAGGCAGAGGTACCAAATAACTGTCTGATAGCAGTTAAGAGATTCTATGATTCTGAAAAGTACAAGAGACAATTCTTGCTTGAAACAATGATTCCAGGGAGACACATGCACCGAAACATAGCCTCTCTGCTTGGATTCTGCATAGAGAAGAAGGAGAGGATACTAGTCTACAGCTACATCTCAAATGGAACATTATGTCACTGGTTACATAATTCTCAATTGGAATGGCCTGAGAGGATTCACATTGCAATTGGGATAGCAAGGGGATTATCTTGGCTTCACAAAAAGTGCAACATCATACACCTCAATCTATCTTCTGAATGTGTCTTGCTAGACAAGAATTTCGAGCCAAAAATTTCGAATTTCGGCAAAGCAAAGTTCATCATGAACCAAAAGAATCATGCAAGGATGAGACTGTTTCTGGTTGATGAAGTCATTGGGGTGAAGGGTTCTTTTGAGAAGGATATCTATGACTTTGGAATAATCCTTTTTGAGCTTATAACAGGACAAAAATTAAGCATAAGTAGTGATTCTTGTTCTACTAATTATGATGATGACATTGGTGTTGATAATAGCTCTTTGAGGAGCTATATTAGCAATAGGTTGTTCACTGATCCTAGTGATTTTTATTATGCCACTGATAAATGCATAACTGGGAAAGGGTTTGATGATAAAATTCATGGCCTCCTAGAAGTTGCATGCAAATGTGTTAAACCTTCTATGGAACAGAGGCTGAAGATGGATTATGTGTATAGAACTATTGCAGCCATGTGGAAAGGTTGA 1791 0.3752 MLSFVPIHIFLWSLLFCFFMIVYGAELGDINCLREINNSSDSSNQIWDFNFNINTIDLCSSFTGIECMNSGIDEEKVISLKLSNMGLEGQFPHCIENFSWLQNLNLSHNKLFGNIPPDISSKLPYLTSLDLSNNNFYGEIPKAIANLSYLNTLRLDGNQLKGTIPKELGFLPRITVFSVANNLLSGPVPVFVNNNVDVSLSYVNNSGLCGGTTLGSCDEESLFGKPFWYSFVIAFVCSATSVIVTFMDYTQPWKEFKKSSKKSNTIYPLRKELNNQKHTTNVAQLLPLALQEEGNKELCRLLERLIPRMSFMELCKATNYFSSNNIMGLGTTGIMYKAEVPNNCLIAVKRFYDSEKYKRQFLLETMIPGRHMHRNIASLLGFCIEKKERILVYSYISNGTLCHWLHNSQLEWPERIHIAIGIARGLSWLHKKCNIIHLNLSSECVLLDKNFEPKISNFGKAKFIMNQKNHARMRLFLVDEVIGVKGSFEKDIYDFGIILFELITGQKLSISSDSCSTNYDDDIGVDNSSLRSYISNRLFTDPSDFYYATDKCITGKGFDDKIHGLLEVACKCVKPSMEQRLKMDYVYRTIAAMWKG* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0728 596 SUPERFAMILY L domain-like 47 208 - -
Amo20g0728 596 Pfam Protein tyrosine and serine/threonine kinase 325 506 IPR001245 GO:0004672|GO:0006468
Amo20g0728 596 Gene3D Phosphorylase Kinase; domain 1 284 395 - -
Amo20g0728 596 Gene3D Transferase(Phosphotransferase) domain 1 397 595 - -
Amo20g0728 596 Pfam Leucine rich repeat 101 160 IPR001611 GO:0005515
Amo20g0728 596 PANTHER RECEPTOR-LIKE PROTEIN 55 6 592 - -
Amo20g0728 596 PANTHER PROTEIN KINASE, PLANT-TYPE, PUTATIVE-RELATED 6 592 - -
Amo20g0728 596 SUPERFAMILY Protein kinase-like (PK-like) 302 588 IPR011009 -
Amo20g0728 596 Gene3D Ribonuclease Inhibitor 30 219 IPR032675 -
Amo20g0728 596 ProSiteProfiles Protein kinase domain profile. 321 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0728 Amo-Chr20 10579964 10582605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0728 14 593 Receptor kinase-like Gene Family AT3G28450 32.053 8.53e-89 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Amo20g0728 PK_Tyr_Ser-Thr 2.2e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0728 - - ahf:112717205 1169.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0728 20 10579964 10582605 Amo10g0025 10 334836 337371 hybridization
Amo13g4445 13 140463898 140471097 Amo20g0728 20 10579964 10582605 PCT
Amo20g0728 20 10579964 10582605 Amo13g4445 13 140463898 140471097 PCT