Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0699 ATGTCTCACGCCAACTGGGAAGCTGATAAAATGCTGGATGTGTATATCTATGATTATCTGATGAAGAGGCAGTTGCATGCTTCTGCCAGGGCATTCCAGGCCGAAGGAAATGTGTCGACCGACCCTGTTGCAATAGATGCGCCTAGTGGTTTTCTCTTCGAGTGGTGGTCTGTTTTCTGGGACATATATATTGCAAGGACCGATCAGAAACACTCAGAAGCAGCGGCAATTTATAGCAAGACCCAACAAAGTAAGGCTCGAGAACTGCAAAAACATCAAGAGCAAGAGCTTCAGAATCCAAATCAGAGACAACAAATGCAAATGCAGCTCTATATGCAGAGATATGCTCAGCAGCAGGAACAGGAGCAGCAGTTACAGGAGCAACGGCAGCAGCAGCTTAGGGCTCAGCTTGTTAGTGGCAGCAGTATCCGTCCTATTAACAATGATCCTTCAATCAGGCAGAAACGTGCAACTTCTAATGCTATGGCAACAAGAGTGTATGAGGACAGGTTGAAGTTGCCACTCCAGAGAGATGATTTAGATGATGTTGCTCTCAAGCAAAAGGGAAGTGGTAATGTTGGCCAGCTTCTGGACCCAAATCATGCCTCATTGTTGAAAGGAGTAGCAGTGACAACTGGTGGCCAGGCTACAGGTCAAACGTCTCTCGGTGCACCTAACATTTTACAAGGCAGTCTTCAACAAGTTCAAAATCAGAACCAGCATCTTCCAGGATCTCTGGACATGAAAAGTGATATGAATCCAATGGTTAGACCTCAAGCTGTTATACCAGATGGATCCTTTGTTGGTGGACATGGTACTGGTTCAAATCAAGGTTGTAGCAATTTGACTCTGAAAGGATGGCCTCTAGCAGGACTGGATCAGCTTCGCTCAGAATTTCTTCAGCAGAATAATTTGATGCAGCCTCCACATTCTCTCAATCATCTTTCAGTGCAGCAGCAACTTATACTTCAGGCACAACAACATGCTGTAGGTTCCCCCTCTGCCACTGATTTTGAGAACAGAAGACTCAGGATGCTTCTTAATAATCCAAATATGGGTCTTGTGAAAGATGGACGATCGAATTCAGCATATGACTCAATTCCTAATGTGTTGGCTGCACAAGTGTGTTCTCCGATGTTGACTCATCCGGATACAGATATGTTCCTTAAGCAACAAATGCAAAACAGCAGTCACCAGCTTCAACAACATCTGCAGCATCCTCCTTCAAACCAGCAGTTGCAGAATCTCCAGCGGCAAGGAAAAATTGGTTCCGGGAGCAATACACAAGATGGGTGCATGTCCACCTTACAAGGAAATGATCAGGCTTCCAAAACTCAAGTTGGCCGAAAGCGAAAGCAAGCATCATCTTCTGGTCCTGCCAATAGTTCTGGAACAGCAACCACCACAGGACCATCTACCAGTTCACCTTCAACACCATCTACACAAACGCTCGGAGATGTGCCAAATCTGCAACAGAATGTTCCATCTTCCAAGTCATTGCTTATGTTTGGTACTGATAGCTTGGGATCACTTACATCGGCCCAAAATCAACTGGCTGATATGGACTGCCTTATTGGTGACGGAACTTTCAGTGACAATGTTGAGTCGCTCTTTTCTGCTGATGATGCAGACCCTAGAGATAAGATTGGCAAAGAATTCTCATTCAAAGAGACTAAATGTGTTATGGCAAGCACACATAAAGTTGAGTGTTGCCACTTCTCATCAGATGGAAAACTGTTTGCTACTGGTGGCCATGATAAAAAGGTATCTTTGTGGTGCACAGAATCGTTTAACCTGAAGTCGACACTAGAAGAACATACTCAGTTGATAACCGATGTTCGATTTAGTTCTTCAAGGACATCGCGCCTTGCTACATCCTCAGCTGACAAAACTGTTCGGATTTGGGATACTGAAAATCCTGGTTATTCTCTTCGAACATTCACAGGACATGGTTCAACTGTGATGTCACTAGACTTTCACCCTAGTAAAGACGACCTTATTTTCTCTTGTGACAATAATGAGATAAGATACTGGAGTATTAAAAACGATGGTTGTGCTGGGGTTTACAAGGGTGGCGTAACTCAGATGAGATTTCAACCTCGTTTGGGAAGGCTTCTTGCAGCTGCAGTAGATAATCTCATTTCCATTATTGATGTAGAAACCCTCGGTTGCACACTCAAATTACAGGGCCATAATAACCTTGTCCGTTCGGTTTGCTGGAACAATTCGGGAAAATATCTAGCATCTCTTAGTGATGATCTTGTTAGGGTATGGACAGTTGGATCAAGTAGCAAAGGGGAGTGCATTCATGAACTCAATGCATCCAGGAACAAATTCAACACCTGTGCCTTCCACCCCTTCTATCCTTTTCTGATCATTGGCTGCAATGAAGCAATTGAGCTGTGGGACTTTGTTCAGAACAAGACATTGACACTGGCTGCTCATGAAAAGCTTGTATCATCCTTGGCAGTATCTAGTGTTAATGGTTTGGTTGCTTCAACTAGTCATGACAAGCATTTCAAGATCTGGAACTGA 2535 0.4402 MSHANWEADKMLDVYIYDYLMKRQLHASARAFQAEGNVSTDPVAIDAPSGFLFEWWSVFWDIYIARTDQKHSEAAAIYSKTQQSKARELQKHQEQELQNPNQRQQMQMQLYMQRYAQQQEQEQQLQEQRQQQLRAQLVSGSSIRPINNDPSIRQKRATSNAMATRVYEDRLKLPLQRDDLDDVALKQKGSGNVGQLLDPNHASLLKGVAVTTGGQATGQTSLGAPNILQGSLQQVQNQNQHLPGSLDMKSDMNPMVRPQAVIPDGSFVGGHGTGSNQGCSNLTLKGWPLAGLDQLRSEFLQQNNLMQPPHSLNHLSVQQQLILQAQQHAVGSPSATDFENRRLRMLLNNPNMGLVKDGRSNSAYDSIPNVLAAQVCSPMLTHPDTDMFLKQQMQNSSHQLQQHLQHPPSNQQLQNLQRQGKIGSGSNTQDGCMSTLQGNDQASKTQVGRKRKQASSSGPANSSGTATTTGPSTSSPSTPSTQTLGDVPNLQQNVPSSKSLLMFGTDSLGSLTSAQNQLADMDCLIGDGTFSDNVESLFSADDADPRDKIGKEFSFKETKCVMASTHKVECCHFSSDGKLFATGGHDKKVSLWCTESFNLKSTLEEHTQLITDVRFSSSRTSRLATSSADKTVRIWDTENPGYSLRTFTGHGSTVMSLDFHPSKDDLIFSCDNNEIRYWSIKNDGCAGVYKGGVTQMRFQPRLGRLLAAAVDNLISIIDVETLGCTLKLQGHNNLVRSVCWNNSGKYLASLSDDLVRVWTVGSSSKGECIHELNASRNKFNTCAFHPFYPFLIIGCNEAIELWDFVQNKTLTLAAHEKLVSSLAVSSVNGLVASTSHDKHFKIWN* 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0699 844 Pfam LisH 10 36 IPR006594 GO:0005515
Amo20g0699 844 MobiDBLite consensus disorder prediction 83 103 - -
Amo20g0699 844 PANTHER LISH-SSDP-WD40 3 844 - -
Amo20g0699 844 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 603 639 - -
Amo20g0699 844 ProSitePatterns Trp-Asp (WD) repeats signature. 623 637 IPR019775 -
Amo20g0699 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 639 IPR001680 GO:0005515
Amo20g0699 844 SMART WD40_4 721 759 IPR001680 GO:0005515
Amo20g0699 844 SMART WD40_4 554 593 IPR001680 GO:0005515
Amo20g0699 844 SMART WD40_4 805 844 IPR001680 GO:0005515
Amo20g0699 844 SMART WD40_4 640 679 IPR001680 GO:0005515
Amo20g0699 844 SMART WD40_4 765 803 IPR001680 GO:0005515
Amo20g0699 844 SMART WD40_4 682 718 IPR001680 GO:0005515
Amo20g0699 844 SMART WD40_4 596 636 IPR001680 GO:0005515
Amo20g0699 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 812 844 IPR001680 GO:0005515
Amo20g0699 844 Gene3D - 685 844 IPR015943 GO:0005515
Amo20g0699 844 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 812 844 - -
Amo20g0699 844 CDD WD40 557 844 - -
Amo20g0699 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 561 592 IPR001680 GO:0005515
Amo20g0699 844 SMART Lish 8 40 IPR006594 GO:0005515
Amo20g0699 844 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 647 682 - -
Amo20g0699 844 Pfam WD domain, G-beta repeat 564 592 IPR001680 GO:0005515
Amo20g0699 844 Pfam WD domain, G-beta repeat 599 636 IPR001680 GO:0005515
Amo20g0699 844 Pfam WD domain, G-beta repeat 643 679 IPR001680 GO:0005515
Amo20g0699 844 Pfam WD domain, G-beta repeat 809 844 IPR001680 GO:0005515
Amo20g0699 844 Pfam WD domain, G-beta repeat 724 758 IPR001680 GO:0005515
Amo20g0699 844 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 3 844 IPR044716 GO:0003714
Amo20g0699 844 MobiDBLite consensus disorder prediction 414 493 - -
Amo20g0699 844 Gene3D - 554 684 IPR015943 GO:0005515
Amo20g0699 844 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Amo20g0699 844 Coils Coil 101 136 - -
Amo20g0699 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 647 682 IPR001680 GO:0005515
Amo20g0699 844 ProSiteProfiles Trp-Asp (WD) repeats profile. 728 760 IPR001680 GO:0005515
Amo20g0699 844 SUPERFAMILY WD40 repeat-like 566 844 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0699 Amo-Chr20 9726154 9732280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0699 641 844 Miscellaneous Gene Families AT5G08390 25.592 7.45e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Amo20g0699 WD40 0.014 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0699 - - aip:107624271 1290.79