Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0684 ATGGCATCACCATCGGAACTAAGCCTTGATTGCAAGCCACACAGCTACTCCATGTTGCTCAAATCCTTTGGAGATCATAATAATAGTAACAGTAATGATCAAGAGCAGAATCAGAGCTACAAGATTGAGGAGTTCCTCTCCCGTCTTGAGGAAGAACGTCTCAAGATCGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAGCTACTCACCAACGCTATGGAGGCGTCAAGGCAGCAACTGCAGGCCTTCAACCAAGGAACAACAAGGCCGGTGCTGGAAGAATTCATTCCCATAAAGCACTCGGAAATCTCAGAGAAGGAGGCGCCGTCTTCCATGAACATGATGATGAGTGATAACAAGGCTAATTGGATGACATCTGCTCAACTATGGAGCCAATCAAGCCAAGAAGTAACGACAAGGGCCGCCACTCCTCCTCCTTCAAAAGATGCTGATAATAACAATAATATTGGATTCATGAGCATGAGCCCCAACAAGCACAGGAACGGGGGCAGTGGAGGAGCCTTCCTGCCGTTCTCCAAGGAACGGAGGAACAACAACTCTTGTACATTGGGAGGTGAGCTGGCACTTGCTTCCCCTGACAAGGAAATGCTCATCATGGATGATGATAATAATAATAATAATAATAAGAGAGACCATTCCTCATCAAATGATCAGGGAAAAGGAACTACTACTAGTAGTGCTACTCCACCTCCATCTACCACCACCACCTCTCAAACACACAGGAAAGCAAGAAGGTGCTGGTCACCCGACCTGCACCGTAGATTTGTTAATGCTCTTCAAATGCTAGGCGGATCTCAAGTGGCGACACCAAAACAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTGAAAAGCCATCTCCAGAAATATAGGCTCCACACGAGAAGACCAAGCCCAAGCCCACAACCAGGTGCACCAGCACCGCAGCTTGTGGTCCTAGGAGGAATCTGGGTCCCACCAGAGTACGCCACAGCTGCCGGAGCCCCTGCCGCCATCTACGGTGCTCACCACCCCGCCTCCCACGCCCCGCCACCGCACTACTGCGCGGCCACCCCAATGCCTCAGGAGTTCTACACGGCGGCTCCACCTCAGCCTCTGCTTCCGCCTCCGCCTCCTCCGCACCACCTGCACATGTACAAGGCGGCTGGACAGAATAGCTCCCCTGAGTCGGAGGTAGGAGGATGCGGAGAGCGGTCGGAGAGCATCGAGGATGGGAAATCGGAGAGTAGTAGCTGGAAGGGTGAGAGTGAAGGAGAGAGGAAAGGGTTGAATGAGGAGAGTAATTGCAGTGACATCACTCTCAAATTCTAG 1347 0.5145 MASPSELSLDCKPHSYSMLLKSFGDHNNSNSNDQEQNQSYKIEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFNQGTTRPVLEEFIPIKHSEISEKEAPSSMNMMMSDNKANWMTSAQLWSQSSQEVTTRAATPPPSKDADNNNNIGFMSMSPNKHRNGGSGGAFLPFSKERRNNNSCTLGGELALASPDKEMLIMDDDNNNNNNKRDHSSSNDQGKGTTTSSATPPPSTTTTSQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQPGAPAPQLVVLGGIWVPPEYATAAGAPAAIYGAHHPASHAPPPHYCAATPMPQEFYTAAPPQPLLPPPPPPHHLHMYKAAGQNSSPESEVGGCGERSESIEDGKSESSSWKGESEGERKGLNEESNCSDITLKF* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0684 448 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 448 IPR044787 GO:0003700|GO:0006355
Amo20g0684 448 MobiDBLite consensus disorder prediction 130 179 - -
Amo20g0684 448 Gene3D - 249 307 - -
Amo20g0684 448 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 247 307 IPR017930 -
Amo20g0684 448 MobiDBLite consensus disorder prediction 408 438 - -
Amo20g0684 448 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 250 305 IPR006447 GO:0003677
Amo20g0684 448 Pfam Myb-like DNA-binding domain 252 303 IPR001005 -
Amo20g0684 448 MobiDBLite consensus disorder prediction 225 250 - -
Amo20g0684 448 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 448 - -
Amo20g0684 448 MobiDBLite consensus disorder prediction 130 168 - -
Amo20g0684 448 Coils Coil 42 62 - -
Amo20g0684 448 MobiDBLite consensus disorder prediction 395 448 - -
Amo20g0684 448 SUPERFAMILY Homeodomain-like 247 308 IPR009057 -
Amo20g0684 448 MobiDBLite consensus disorder prediction 205 224 - -
Amo20g0684 448 MobiDBLite consensus disorder prediction 205 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0684 Amo-Chr20 9379798 9381644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0684 1 372 G2-like Transcription Factor Family AT2G03500 53.368 3.47e-118 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo20g0684 Myb_DNA-binding 9.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0684 - - gmx:100807925 494.582