Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0683 ATGGCATCACCATCGGAACTAAGCCTTGATTGCAAGCCACACAGCTACTCCATGTTGCTGAAATCCTTTGGAGATCATAATAATAGTAACAGTAATGATCAAGAGCAGAATCAGAGCTACAAGATTGAGGAGTTCCTCTCCCGTCTTGAGGAAGAACGTCTCAAGATCGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAGCTACTCACCAACGCTATGGAGGCGTCAAGGCAGCAACTGCAGGCCTTCAACCAAGGAACAACAAGGCCGGTGCTGGAAGAATTCATTCCCATAAAGCACTCGGAAATCTCCGAGAAGGAGGCGCCGTCTTCCATGAACATGATGATGAGTGATAACAAGGCTAATTGGATGACATCTGCTCAACTATGGAGCCAATCAAGCCAAGAAGGAACGACAAGCGCTGCCACTCCTCCTCCTTCAAAAGATGCTGATAATAACAATAATATTGGATTCATGAGCATGAGCCCCAACAAGCACAGGAACGGGGGCAGTGGAGGAGCCTTCCTGCCGTTCTCCAAGGAACGGAGGAACAACAACTCTTGTACATTGGGAGGTGAGCTGGCACTTGCTTCCCCTGACAAGGAAATGCTCATCATGGATGATGATAATAATAATAATAATAATAAGAGAGACCATTCCTCATCAAATGATCAGGGAAAAGGAACTACTACTAGTAGTGCTACTCCACCTCCATCTACCACCACCACCTCTCAAACACACAGGAAAGCAAGAAGGTGCTGGTCACCCGACCTGCACCTGGCGACACCAAAACAGATAAGGGAGTTGATGAAGGTTGACGGTTTGACCAATGATGAAGTGAAAAGCCATCTCCAGAAATATAGGCTCCACACGAGAAGACCAAGCCCAAGCCCACAACCAGGTGCACCAGCACCGCAGCTTGTGGTCCTAGGAGGAATCTGGGTCCCACCAGAGTACGCCACAGCTGCCGGAGCCCCTGCCGCCATCTACGGTGCTCACCACCCCGCCTCCCACGCCCCGCCACCGCACTACTGCGCGGCCACCCCAATGCCTCAGGAGTTCTACACGGCGGCTCCACCTCAGCCGCTGCTTCCGCCTCCGCCTCCTCCGCACCACCTGCACATGTACAAGGCGGCTGGACAGAATAGCTCCCCTGAGTCGGAGGTAGGAGGATGCGGAGAGCGGTCGGAGAGCATCGAGGATGGGAAATCGGAGAGTAGTAGCTGGAAGGGTGAGAGTGAAGGAGAGAGGAAAGGGTTGAATGAGGAGAGTAATTGCAGTGACATCACTCTCAAATTCTAA 1305 0.5188 MASPSELSLDCKPHSYSMLLKSFGDHNNSNSNDQEQNQSYKIEEFLSRLEEERLKIDAFKRELPLCMQLLTNAMEASRQQLQAFNQGTTRPVLEEFIPIKHSEISEKEAPSSMNMMMSDNKANWMTSAQLWSQSSQEGTTSAATPPPSKDADNNNNIGFMSMSPNKHRNGGSGGAFLPFSKERRNNNSCTLGGELALASPDKEMLIMDDDNNNNNNKRDHSSSNDQGKGTTTSSATPPPSTTTTSQTHRKARRCWSPDLHLATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSPSPQPGAPAPQLVVLGGIWVPPEYATAAGAPAAIYGAHHPASHAPPPHYCAATPMPQEFYTAAPPQPLLPPPPPPHHLHMYKAAGQNSSPESEVGGCGERSESIEDGKSESSSWKGESEGERKGLNEESNCSDITLKF* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0683 434 MobiDBLite consensus disorder prediction 130 179 - -
Amo20g0683 434 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 434 IPR044787 GO:0003700|GO:0006355
Amo20g0683 434 MobiDBLite consensus disorder prediction 205 260 - -
Amo20g0683 434 MobiDBLite consensus disorder prediction 381 434 - -
Amo20g0683 434 MobiDBLite consensus disorder prediction 225 250 - -
Amo20g0683 434 SUPERFAMILY Homeodomain-like 247 294 IPR009057 -
Amo20g0683 434 MobiDBLite consensus disorder prediction 130 168 - -
Amo20g0683 434 Gene3D - 246 294 - -
Amo20g0683 434 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 260 291 IPR006447 GO:0003677
Amo20g0683 434 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 434 - -
Amo20g0683 434 Coils Coil 42 62 - -
Amo20g0683 434 MobiDBLite consensus disorder prediction 394 424 - -
Amo20g0683 434 MobiDBLite consensus disorder prediction 205 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0683 Amo-Chr20 9367816 9369451 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0683 1 358 G2-like Transcription Factor Family AT2G03500 49.741 1.06e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo20g0683 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0683 - - gmx:100807925 460.299