Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0674 ATGGATAAGAAAAAGGTTGCGGTTCCTCTTGTTTGCCATGGTCACTCTCGCCCGGTGGTTGATCTCTTCTACAGTCCTGTAACTCCCGATGGATTCTTTCTCATCAGTGCAAGCAAGGATTCTAGTCCTATGCTCAGGAATGGAGAGACTGGGGATTGGATTGGAACATTTGAAGGGCACAAAGGTGCGGTGTGGAGTTGCTGCTTGGATACTAATGCGTTGCGTGCTGCTACTGCTTCTGCTGATTTTTCAACGAAAGTCTGGGATGCATTAACAGGAGATGAGTTGCATTCTTTTGAGCATAAACATATTGTTCGAGCATGTGCTTTTTCTGAGGATACACACCTTTTGCTCACTGGAGGAGTTGAGAAAATTCTCCGAATTTATGATTTGAATCGACCTGATGCACCACCCAGGGAAGTTGATAAATCTCCTGGTTCAGTGAGAACTGTTGCATGGCTTCATAGTGACCAGACAATATTGAGTTCTTGTACTGATATGGGTGGAGTCAGGCTATGGGATGTAAGAAGTGGTAAAATAGTACAGACACTTGAAACCAAGTCATCTGTTACAAGTGCAGAAGTGAGTCAGGATGGCCGTTATATTACAACTGCTGATGGTTCTAGTGTGAAGTTCTGGGATGCTAATTACTATGGATTAGTAAAGAGCTATGACATGCCTTGTACGGTGGAATCTGCATCCTTGGAGCCAAAGTATGGGAACAAGTTTGCTGCTGGAGGAGAAGACATGTGGGTTCGTGTGTTTGATTTCCATACAGGCAGTGAGATTGCATGCAACAAGGGCCACCATGGTCCTGTCCACTGTGTCCGTTTCTCTCCCGGAGGAGAATCATATGCCTCAGGATCTGAGGACGGAACCATCAGAATATGGCAGACAGGTCCATTGACTCAGGAAGACTCGGAGGCTTTACCTGCAAATGGATCAATTGAGAAGGTGAAGGTAACTGCGGATGAGGTTTCACGCAAGATTGAGGGATTTCATATTGCAGATGAGGGGAAATCCAAAGAGAAGGAAGAGGCAGGGGAGGAGTAA 1053 0.4568 MDKKKVAVPLVCHGHSRPVVDLFYSPVTPDGFFLISASKDSSPMLRNGETGDWIGTFEGHKGAVWSCCLDTNALRAATASADFSTKVWDALTGDELHSFEHKHIVRACAFSEDTHLLLTGGVEKILRIYDLNRPDAPPREVDKSPGSVRTVAWLHSDQTILSSCTDMGGVRLWDVRSGKIVQTLETKSSVTSAEVSQDGRYITTADGSSVKFWDANYYGLVKSYDMPCTVESASLEPKYGNKFAAGGEDMWVRVFDFHTGSEIACNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTQEDSEALPANGSIEKVKVTADEVSRKIEGFHIADEGKSKEKEEAGEE* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0674 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 98 132 IPR001680 GO:0005515
Amo20g0674 350 PANTHER OS02G0205400 PROTEIN 1 345 - -
Amo20g0674 350 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 345 - -
Amo20g0674 350 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 266 298 - -
Amo20g0674 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 298 IPR001680 GO:0005515
Amo20g0674 350 ProSiteProfiles Trp-Asp (WD) repeats profile. 57 98 IPR001680 GO:0005515
Amo20g0674 350 CDD WD40 14 298 - -
Amo20g0674 350 Pfam WD domain, G-beta repeat 94 130 IPR001680 GO:0005515
Amo20g0674 350 Pfam WD domain, G-beta repeat 54 89 IPR001680 GO:0005515
Amo20g0674 350 Pfam WD domain, G-beta repeat 266 297 IPR001680 GO:0005515
Amo20g0674 350 Pfam WD domain, G-beta repeat 179 214 IPR001680 GO:0005515
Amo20g0674 350 SUPERFAMILY WD40 repeat-like 4 302 IPR036322 GO:0005515
Amo20g0674 350 SMART WD40_4 134 174 IPR001680 GO:0005515
Amo20g0674 350 SMART WD40_4 92 130 IPR001680 GO:0005515
Amo20g0674 350 SMART WD40_4 259 298 IPR001680 GO:0005515
Amo20g0674 350 SMART WD40_4 177 214 IPR001680 GO:0005515
Amo20g0674 350 SMART WD40_4 5 47 IPR001680 GO:0005515
Amo20g0674 350 SMART WD40_4 50 89 IPR001680 GO:0005515
Amo20g0674 350 SMART WD40_4 217 256 IPR001680 GO:0005515
Amo20g0674 350 Gene3D - 9 325 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0674 Amo-Chr20 9087615 9091940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0674 9 296 Eukaryotic Initiation Factors Gene Family AT2G46290 28.221 6.87e-39 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0674 K13137 - gmx:100818422 673.315