Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0664 ATGAAAGGGGAAGTGCAGCTGCAACCACCGGTGGTTCAGCAGAACCTTAGTGATTCCGAGCCTTTGCTCGAAAACCAGGAGGAGGATGTGTCCCCTGTAAGCTCCACTGAGATCAAAGATGAGGACTTGGAGGCTGGTTCACTCCCTTGCTGTCGAATTTGTCTTGAAAGCGATTCCGACCCAGAGGATGAACTGATATCTCCATGCATGTGCAAAGGGACCCAACAATTTGTCCACCGTTCATGTCTTGATCACTGGCGCTCGGTAAAGGAAGGATTTGCCTTCTCTCACTGCACTACTTGCAAAGCCCAATATCATCTCAGGGTTGAATTGTTTGAGGACAATTCTTGGCGTAAAGCAAAGTTTAGACTCTTTGTTGCAAGAGATGTTTTCCTTGTTTTTCTGGCTGTACAGACCGTAATTGCGGGTATAGGTGGCTTTGCATACATCATGGACAAGGATGGGAACTTCAGGAACTCTTTTGATGATGGTTGGGATAGGATACTGTCAAAACATCCTATACCATTCTATTATTGTATTGGAGTGCTGGCTTTCTTTGTACTGATCGGGTTTTTCGGTCTCATACTGCATTGCACCTCCCTCAACAGCAATGACCCCAGAATGGCTGGTTGTCAGAATTGTTGTTATGGATGGGGCATCCTTGATTGCTTTCCTGCATCAATGGAGGCTTGCTTTGCCCTTGTTGTGGTTTTCGTAGTCATCTTTGCTATTCTCGGCATTGCTTATGGTTTCCTTGCAGCCACCATGGCAATCCAAAGAATTTGGCAAAGGCACTACCATATTCTCACCAAAAGGGAGCTTACAAAGGAATACGTAGTAGAGGATCTATGTGGGACCTATGTCCCACCAAAGTTGGATCCAGAACATGAAGCTCGCTTGAAAATGCTCAAGCTTTTGTAA 921 0.456 MKGEVQLQPPVVQQNLSDSEPLLENQEEDVSPVSSTEIKDEDLEAGSLPCCRICLESDSDPEDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQYHLRVELFEDNSWRKAKFRLFVARDVFLVFLAVQTVIAGIGGFAYIMDKDGNFRNSFDDGWDRILSKHPIPFYYCIGVLAFFVLIGFFGLILHCTSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVVIFAILGIAYGFLAATMAIQRIWQRHYHILTKRELTKEYVVEDLCGTYVPPKLDPEHEARLKMLKLL* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0664 306 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 306 - -
Amo20g0664 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 115 IPR013083 -
Amo20g0664 306 Pfam RING-variant domain 51 101 IPR011016 GO:0008270
Amo20g0664 306 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 1 306 - -
Amo20g0664 306 SMART ringv_2 50 102 IPR011016 GO:0008270
Amo20g0664 306 ProSiteProfiles Zinc finger RING-CH-type profile. 43 108 IPR011016 GO:0008270
Amo20g0664 306 SUPERFAMILY RING/U-box 48 106 - -
Amo20g0664 306 MobiDBLite consensus disorder prediction 1 38 - -
Amo20g0664 306 CDD RING_CH-C4HC3_MARCH 51 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0664 Amo-Chr20 8936971 8940815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0664 1 306 C3H Transcription Factor Family AT1G11020 79.751 7.06e-172 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0664 - - gmx:100818950 564.303