Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0652 ATGCCTCTTCCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTTGGGTTGTACCCTCTTTGGTAACCATGAGGTTCCTAACTCAATGGAGATGATTCTCCTTGATGAGCATTGTGAAAAAATTAAAGCTACAGTTAAGAAACCACTCCTTAATATGTTTAGGGATCATATAGTTGAAGGTCAAATTTATAAAATGGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTCCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAGCATGTTTCCTTTTTCTGAGCTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGGTGTGTTGTGTTTATTTGGAATAGTTGTCATTGGTCTTTTAACTTCAGTGGGAGAAGAGAAAGAATATGCAAAAGAGGAAAAAAATGTGAAAATGATTGTGCTGGAATTAACTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTGGGGATTATGTGAATCAAGTAAATTATTTCCTTGCCTCTGGCTATGTGGAACAGCCTGTTGTAGTTATTCAACTTGCAAAAGTCAAGTTCTTTAGGGGTCAAGTAGGTCTTCAAAATGTGATGTATACCACTCGAATGTTATTTAATCCTGATCTTCCTGAAGTTGTTGAATTCAGGCAGAGTATGATTGAGCAATGTGTCAATGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTACTTGTGTGTGTGGAAAGGGTATCTATCCTAAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAATACTTGAAGATCATAGTGGGGAGGGTATTTTCCTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTGTTTATTGAGGTTCAAAGAGATGCAAGTATTATATATGGGGATACTTATCCTCCCATATTCCAAGGGCTCATTGGAAAGAAGTTACTACTGAAGGTTGATACCAAAGGTGTCACACATGATGCATTTTATGGCACTTTCCAAGTTAGGAGAATATGTGATGATCACACCATTATTGCCATATGGAAAGATGAGAAAACACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAACTCGATATATTGCTTAGCTCACCAGAAAAAGAAACTCAGGAGGTGTTGTCCCACGTTCTCGATGCACCTTCCCAATATGGAGTGAAGCTTATTCATGAAAATCATGTTGTCACCTCCAAGGGCAAGAGAAATTTGAATCCCCAATTTGAAGAGGCAGCTACTGATGCAGATGGGCGTGGGTCCAAGATTGCCAAGGTTAATGGAGTTTGA 1410 0.3773 MPLPFDMISKMHPPREALGCTLFGNHEVPNSMEMILLDEHCEKIKATVKKPLLNMFRDHIVEGQIYKMAYFTVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFSMFPFSELLNMTQDYDFLVGVLCLFGIVVIGLLTSVGEEKEYAKEEKNVKMIVLELTSKDLTVRCALFGDYVNQVNYFLASGYVEQPVVVIQLAKVKFFRGQVGLQNVMYTTRMLFNPDLPEVVEFRQSMIEQCVNGIVEDGGWWYSTCVCGKGIYPKNGAYYCDFCLKHITNVTPRFKIKIILEDHSGEGIFLLFDREASYLLKKSCADLFIEVQRDASIIYGDTYPPIFQGLIGKKLLLKVDTKGVTHDAFYGTFQVRRICDDHTIIAIWKDEKTPSNDTVSDDLSAELDILLSSPEKETQEVLSHVLDAPSQYGVKLIHENHVVTSKGKRNLNPQFEEAATDADGRGSKIAKVNGV* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0652 469 SUPERFAMILY Nucleic acid-binding proteins 138 239 IPR012340 -
Amo20g0652 469 Gene3D - 21 102 IPR012340 -
Amo20g0652 469 SUPERFAMILY Nucleic acid-binding proteins 249 357 IPR012340 -
Amo20g0652 469 Pfam Replication factor-A C terminal domain 249 322 IPR013955 -
Amo20g0652 469 PANTHER REPLICATION FACTOR A 1, RFA1 27 322 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo20g0652 469 CDD RPA1_DBD_C 249 356 IPR013955 -
Amo20g0652 469 CDD RPA1_DBD_A_like 31 97 - -
Amo20g0652 469 Gene3D - 240 375 IPR012340 -
Amo20g0652 469 Gene3D - 109 239 IPR012340 -
Amo20g0652 469 CDD RPA1_DBD_B_like 139 241 - -
Amo20g0652 469 SUPERFAMILY Nucleic acid-binding proteins 32 102 IPR012340 -
Amo20g0652 469 Pfam Domain of unknown function DUF223 33 124 IPR003871 -
Amo20g0652 469 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 27 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0652 Amo-Chr20 8649228 8652096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0652 36 321 Core DNA Replication Machinery Family AT5G08020 20.000 1.88e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0652 - - adu:110280586 609.372