LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo20g0633	ATGGAAGTTTTACTCAAGAGGTTTCTCAGGGCCACGCCTATCGCATTCGCCAATGCTTTCAACGCCCAATCCAAGTCCTCTTCCTCCTCCTCCTCTTACTCTTCCGCCAAATTCCGCCTACCATATGCTGCTGTCGCCGCCGGCGTCTCCGGCGGACTCTCCTGCTTCTACTTTCTCTCCTCTCCTAACCTTGTTCATTCAGAGCAGGCTGAAGAAGGGGAAATAAAAAATATTGCACTTAATCCAGATAAATGGGTTGAATTTAAGTTGCAAGATACTGCCAGAGTCAGTCACAATACCCAGCTATTCAGGTTTTCGTTTGATCCTACTAAAAAGTTGGGTTTGGATATTGCTTCCTGCATTCTTACAAGAGCTCCATTGGGACAGGATGCTGAAGGGAAACCGAAATATGTGATACGTCCGTATACTCCTATATCAGATCCAGAAGCCAAGGGATATTTTGATTTGTTAATCAAGGTGTATCCTGAAGGAAAAATGAGTCAGCATTTTGCAAGCTTGAAACCGGGTGATGTTGTTGAAGTTAAAGGGCCCATTGAAAAGCTCAGATATACCCCTAACATGAAGAAGCATATAGGCATGGTTGCTGGGGGCTCAGGAATTACTCCAATGCTTCAGGTAATTGAGGCGATATTGAAGAATCCTGATGACAAAACTAAGATATCATTGCTGTATGCTAATGTGTCCCCAGATGACATACTGCTTAAACAGAAGCTTGATGTTCTAGCTGCAACCCACCCTAACTTAAAGATATTCTACACAGTTGATAATCCAACAAAAAATTGGAGGGGAGGTTCAGGTTTAATATCAGAGGATATGGTTGTGAAAGGTTTACCTGCTCCTGCTGACGATACTCTAATACTTGTGTGTGGTCCCCCTGGGATGATGAAACACGTATCTGGTGAGAAGGCCAAAGATTGGACACAAGGAGAGGTTTCTGGTTTACTCAAAGAAGCTGGATACACTGAACAAATGGTTTACAAATTCTGA	1008	0.4335	MEVLLKRFLRATPIAFANAFNAQSKSSSSSSSYSSAKFRLPYAAVAAGVSGGLSCFYFLSSPNLVHSEQAEEGEIKNIALNPDKWVEFKLQDTARVSHNTQLFRFSFDPTKKLGLDIASCILTRAPLGQDAEGKPKYVIRPYTPISDPEAKGYFDLLIKVYPEGKMSQHFASLKPGDVVEVKGPIEKLRYTPNMKKHIGMVAGGSGITPMLQVIEAILKNPDDKTKISLLYANVSPDDILLKQKLDVLAATHPNLKIFYTVDNPTKNWRGGSGLISEDMVVKGLPAPADDTLILVCGPPGMMKHVSGEKAKDWTQGEVSGLLKEAGYTEQMVYKF*	336

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Amo20g0633	335	Pfam	Oxidoreductase FAD-binding domain	88	190	IPR008333	-
	Amo20g0633	335	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	140	147	IPR001709	GO:0016491
	Amo20g0633	335	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	199	218	IPR001709	GO:0016491
	Amo20g0633	335	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	237	248	IPR001709	GO:0016491
	Amo20g0633	335	PRINTS	Flavoprotein pyridine nucleotide cytochrome reductase signature	292	300	IPR001709	GO:0016491
	Amo20g0633	335	Gene3D	-	182	335	IPR039261	-
	Amo20g0633	335	PANTHER	NADH-CYTOCHROME B5 REDUCTASE	27	335	IPR001834	GO:0016491
	Amo20g0633	335	PANTHER	NADH-CYTOCHROME B5 REDUCTASE-LIKE	27	335	-	-
	Amo20g0633	335	SUPERFAMILY	Riboflavin synthase domain-like	78	193	IPR017938	-
	Amo20g0633	335	CDD	cyt_b5_reduct_like	88	335	-	-
	Amo20g0633	335	SUPERFAMILY	Ferredoxin reductase-like, C-terminal NADP-linked domain	177	333	IPR039261	-
	Amo20g0633	335	Gene3D	Translation factors	78	181	-	-
	Amo20g0633	335	PRINTS	Cytochrome B5 reductase signature	140	147	-	-
	Amo20g0633	335	PRINTS	Cytochrome B5 reductase signature	176	190	-	-
	Amo20g0633	335	PRINTS	Cytochrome B5 reductase signature	199	218	-	-
	Amo20g0633	335	PRINTS	Cytochrome B5 reductase signature	237	248	-	-
	Amo20g0633	335	PRINTS	Cytochrome B5 reductase signature	292	300	-	-
	Amo20g0633	335	Pfam	Oxidoreductase NAD-binding domain	200	306	IPR001433	GO:0016491
	Amo20g0633	335	ProSiteProfiles	Ferredoxin reductase-type FAD binding domain profile.	83	191	IPR017927	GO:0016491

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo20g0633	Amo-Chr20	8348550	8353270	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Amo20g0633	76	335	NADPH P450 reductases	AT5G17770	42.748	1.51e-66	209

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo20g0633	K00326		-	gmx:100781191	545.043