Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0632 ATGGACGAAGCTTCGTTGATGCGCAACACCGATTGCGTTTATTTCTTGGCATCTCCCCTCACTTGCAAGAAGGGAGCTGAATGCGAGTATCGGCATAATGAGATTGCGAGGCTTAACCCTAGGGATTGCTGGTACTGGTTATCTGGCAGTTGCCTTAATCCAACATGTGCTTTCAGGCACCCTCCATTGGATGGCCAGACTGGAGTTTCATCTGAGCCAACACAGTCTGCTGTGCCTGCAAATAAGACAATGGTTCCCTGTTATTTTTTCTTCTATGGATATTGCAATAAAGGCGACAGATGCTCATTTTTGCATGGGCATGATGAGAGCCATTTCACTGTAAAGCCTGTAAAGAATGACAAGGGAGGCACTGATCCACCCAACCTAGAGAATAAGGTGTTGTCAGGAACTGCCCCATCAACAACTGAAACTCATTCGAACCCATCGTTAACTGCCCCAAAGGCTTTGCCCACTTTCAAGCCTCCACCTAAGGAAGATCTTCAACTATCCTTACCAAAAAATGTTAAACAGCAAGGTGATTTCCCTACATATGTTAAACAGCAAGGTGATTCCCCTACATATGCTGTTGAGTATGAAGAAGCTACAGTTGCAGGGTCGGAGTCTCCGTATCCAGAAGAAAGATTTGTTGATAACATCTCTCAACGATGCAGTGAGCAGGGTTCAGAGGAGCAAGTAAATGGTCACATCGAGCCTGATGAACGTTGGGAATCATCATCCCCTGGATTTGATGTTCTTGTTCATGATGAATCGGCAAACTTGGGCTATGAGGAGGATCCTGAATATCTTCCTGATGGGGAACATGAGGAACTGAATGAACAATACTTGGGGTATGAATTTGAAAACCCAGTTGAGTATGATAATATGTGCCGCAAAGCTGACATCCTGTATGAACAAGAAATGTATGATGATTATAGACGTTTAGATAGAGATCTTACTCGTGCTAATGGCAGAAGAGTTTGTGATTGTTCCAGTGATATAATCTTAGATTCTATGTTGACTAGGAAAAGGATTCAGATGAGTGATATAGCTAGCTGTGACGGGAAGTTAGATCTACGAGACCATCTGAGAAGACGAAGGGAAAGTAGTGGTCCACCTGATGCGAGTTTCATCAGACGACATGAATCCTCTTCTTTGATGGTTCGAAACCGGGAAAGGCATCAAAGGCATTACAATGAACAGAGACTAAGGGGAAGATTGTCATCGCAAGTGGGAATTACCACTATAGACCCCATTGGAGAGGTTGAAACTCTTTCAATTGCTAACAAGCCAAGGTTATCTAGGAATTCCCAGCAGCATTGGCCAAGGAAGCATTATAGAGAAAAGCCATCTAAACGCCAGTTTCATTCATCTAATGACTCCAGGAGACCAGTTTTCAAGCAAAGGAGATTTGTTCACGAGTCCTCTACATTTTCAGGACCCAAGAGCCTTGCAGAAATTAGAGAAGAGAAGAAAAAGGCTGCAGGAAGTTTTCACTGCAAAAGCACATCACCTGATTTTCAGGACCCCAAACCTCTTAGTGAAATTCTCAAGGGCAAAAGGAGTGTGGACGGAGTTGGAGATGTCAATGTCTGCAGCAACTGA 1602 0.4382 MDEASLMRNTDCVYFLASPLTCKKGAECEYRHNEIARLNPRDCWYWLSGSCLNPTCAFRHPPLDGQTGVSSEPTQSAVPANKTMVPCYFFFYGYCNKGDRCSFLHGHDESHFTVKPVKNDKGGTDPPNLENKVLSGTAPSTTETHSNPSLTAPKALPTFKPPPKEDLQLSLPKNVKQQGDFPTYVKQQGDSPTYAVEYEEATVAGSESPYPEERFVDNISQRCSEQGSEEQVNGHIEPDERWESSSPGFDVLVHDESANLGYEEDPEYLPDGEHEELNEQYLGYEFENPVEYDNMCRKADILYEQEMYDDYRRLDRDLTRANGRRVCDCSSDIILDSMLTRKRIQMSDIASCDGKLDLRDHLRRRRESSGPPDASFIRRHESSSLMVRNRERHQRHYNEQRLRGRLSSQVGITTIDPIGEVETLSIANKPRLSRNSQQHWPRKHYREKPSKRQFHSSNDSRRPVFKQRRFVHESSTFSGPKSLAEIREEKKKAAGSFHCKSTSPDFQDPKPLSEILKGKRSVDGVGDVNVCSN* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0632 533 MobiDBLite consensus disorder prediction 115 167 - -
Amo20g0632 533 SMART c3hfinal6 7 34 IPR000571 GO:0046872
Amo20g0632 533 SMART c3hfinal6 81 107 IPR000571 GO:0046872
Amo20g0632 533 SMART c3hfinal6 39 62 IPR000571 GO:0046872
Amo20g0632 533 MobiDBLite consensus disorder prediction 429 464 - -
Amo20g0632 533 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 1 521 - -
Amo20g0632 533 ProSiteProfiles Zinc finger C3H1-type profile. 6 35 IPR000571 GO:0046872
Amo20g0632 533 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 32-LIKE 1 521 - -
Amo20g0632 533 MobiDBLite consensus disorder prediction 383 398 - -
Amo20g0632 533 SUPERFAMILY CCCH zinc finger 84 111 IPR036855 GO:0046872
Amo20g0632 533 MobiDBLite consensus disorder prediction 130 153 - -
Amo20g0632 533 ProSiteProfiles Zinc finger C3H1-type profile. 81 108 IPR000571 GO:0046872
Amo20g0632 533 Pfam RNA-binding, Nab2-type zinc finger 86 106 - -
Amo20g0632 533 MobiDBLite consensus disorder prediction 363 398 - -
Amo20g0632 533 Pfam Zinc-finger containing family 8 64 IPR041686 -
Amo20g0632 533 MobiDBLite consensus disorder prediction 436 450 - -
Amo20g0632 533 Gene3D - 72 132 - -
Amo20g0632 533 Gene3D - 2 63 - -
Amo20g0632 533 ProSiteProfiles Zinc finger C3H1-type profile. 37 63 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0632 Amo-Chr20 8342972 8346006 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo20g0632 zf-CCCH_3 4.6e-11 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0632 - - adu:107469835 1012.68