Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0621 ATGGCATTGGGTGCTGCAAAGGAATCTTATCCCCAAAGGCCTGGTGAGGCTGATTGTATCTACTATTTGAGGACTGGATTTTGTGGCTATGGTTCCTGCTACCGTTTCAACCATTTTCGTGATCGGACCGAAGTTGTTGGTGTTGTTGCTAGGACTGGAGGAGGGGAGTACTCGGAGCGAATTGGCCAGCCTTTGTGCCAGTTGCAGTTCATTTGGGATGCTGAGTACGACCTGGCCATCCGGAAGATATTCGACTATAGGATGGGTCGGCGGCTCCAACAGATGCTGGACGATGTTTGCCACAGTCGAGACCAACGGACGCGCTAG 327 0.5199 MALGAAKESYPQRPGEADCIYYLRTGFCGYGSCYRFNHFRDRTEVVGVVARTGGGEYSERIGQPLCQLQFIWDAEYDLAIRKIFDYRMGRRLQQMLDDVCHSRDQRTR* 109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0621 108 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN-RELATED 2 68 - -
Amo20g0621 108 PANTHER PROTEIN PHOSPHATASE RELATED 2 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0621 Amo-Chr20 7811322 7813932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0621 8 67 C2H2 Transcription Factor Family AT5G18550 63.333 2.93e-20 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo20g0621 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0621 - - csin:114302989 104.375