Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0600 ATGCATCGTAAGAATGGACAGTTTGCGTCACTCAAGGAAGGCTACAAATCTCCTGCTGAAAATTTCGATTCAAGCAATGGTGGAGGTGATACTTATTCACAGTCTATTGAACGTAGATGTCAGCATTGTGGAACTAGTGAGAAGTCAACTCCAGCTATGCGTCGAGGACCTTCTGGTCCAAGATCTCTGTGCAACGCCTGTGGTCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCATCAAGAGTCACTTTTGAACAAAATGGACTGGATACATCAGCTGATATAAAACCTTCACCAACAGAACCAGAGAACTCTTCTCCTGACCAGAACGAGGATATCTGCCTAGAGGAAGCCAAACCTGTGCCAATAGATTCGAGACAGTCACCTGAGAGGAACAATGATCAGTATACACTTGATACTGCGGAAGCCGTTACCAACGATTCATCTATCCAAATGGAGAATAATGCTCTCAGCATACATCAAGAGGATAATAAACTTGAAGATTTTGCTGACGCTTCTGGGACAGAATTTGATATTCCTGCCTGTTTTGATGAGCAGGTTGACATTGACATTGATGATTCCAACATGAGGACTTACTGGCTATGA 618 0.432 MHRKNGQFASLKEGYKSPAENFDSSNGGGDTYSQSIERRCQHCGTSEKSTPAMRRGPSGPRSLCNACGLMWANKGTLRDLSKASRVTFEQNGLDTSADIKPSPTEPENSSPDQNEDICLEEAKPVPIDSRQSPERNNDQYTLDTAEAVTNDSSIQMENNALSIHQEDNKLEDFADASGTEFDIPACFDEQVDIDIDDSNMRTYWL* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0600 205 Pfam GATA zinc finger 40 76 IPR000679 GO:0006355|GO:0043565
Amo20g0600 205 Gene3D - 32 92 IPR013088 GO:0006355|GO:0008270
Amo20g0600 205 MobiDBLite consensus disorder prediction 19 33 - -
Amo20g0600 205 MobiDBLite consensus disorder prediction 91 115 - -
Amo20g0600 205 ProSitePatterns GATA-type zinc finger domain. 40 67 IPR000679 GO:0006355|GO:0043565
Amo20g0600 205 PANTHER GATA TRANSCRIPTION FACTOR 28 1 194 IPR045280 GO:0006355
Amo20g0600 205 MobiDBLite consensus disorder prediction 1 33 - -
Amo20g0600 205 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 1 194 - -
Amo20g0600 205 CDD ZnF_GATA 39 82 IPR000679 GO:0006355|GO:0043565
Amo20g0600 205 ProSiteProfiles GATA-type zinc finger domain profile. 34 90 IPR000679 GO:0006355|GO:0043565
Amo20g0600 205 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 88 - -
Amo20g0600 205 SMART GATA_3 34 87 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0600 Amo-Chr20 7573419 7576204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0600 1 98 Tify Gene Family AT1G51600 51.923 3.78e-25 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Amo20g0600 GATA 9.1e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0600 - - adu:107468732 420.624