Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0583 ATGCCTCCTCCATTTGATATGATTTCTAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTGAAAGTTAGGGTTCTAAGGCTTTGGGTTGTACCCTCTTTTGGAAATCATGATGTTCCTAACTTAATGGAGATGATTTTGATCTCCTTTATGAGCATGTTAGCCCCTATTAGCTTCTCTTTTAAATATGGTTGTGAAAAAATTCAAGCTACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTAAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAATTGGTTTTTCTTCACCGAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTCAACATGTTTTCTTTTTCTGAACTGCTGAACATGACCCAAGATTATGATTTTTTAGTTGATGTCATTGGCCTTTTAACTTCAGTGAGGAAAGAGAAAGAATATGCAAAAGAGGAAAAAATTGTGAAAATGATTGTGCTTGAATTAACTTCAAAAGATCTTACAGTGCGATGTGCATTGTTTGGGGACTATGTTAATCAAGTAAATCATTTCCTTGCYTYTGGCTATGTGGARCAGCCTGTTRTGGTGATTCAACTTGCTAAAGTCAAGTTCTTTAGGGGTCAAGTAGGCCTTCAAAATGTGATRTATGCCACTYAAATRTTATTTAATCYTGATYTTCYTGAAGTTGTTGAATTCAGRCAGAGTATGATTGAGCAAGGTGTCAATGGTACCCAACCACTGTTTATTGCAAATGAAGGTAAAATTGTCTCCTTGGAAGATGATTTCATGCATTTAACTAGAAAATGTACTATTGAAGAGCTTCAAGATAACAATGAGGAGGGTTCTTTTATCATTTTTGGTACAATCCAAGGTATTGTTGAGGATGGAGGTTGGTGGTATTCTGCTTGTGTGTGTGGAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGTACATAATTAATGTGACTCCAAGATTTAAAATTAAAATAACAGTTGAAGATCATAGTGGGGAGGGTATTTTCCTTTTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGCTGACTTATTTACCGAGGAGCCTGATTTACACAAATCTGTTCCCTGTGGAGAAGGGGATATTGGTATTAAGAAGGAGTCATCAAAGACTTTTATCAAAAGTGAGAAAGTTGCTGGTGAGTCTTCTGGAATTTTATCTAAATCCCCAGTTCTTATAAATTTTCTGGCTGGAAAACAGCCTGCTGTTTCCGGAGAGACTGAGTTTGCTTCCTTAATTAATGGTGAACATGGAAAAGATGAAAAAACACCCAGCAATGATACTGTTAGTGATGATCTTTCTGCTGAACTGGATATATTGCTTAGCTCACCAGAAAAAGAAACTCAGGAGGTGTTGTCCCACATTATTGATGCACCTTCCCAATATGGAGAGAAGCTTATTCATGAAAATCATGTTGTCACCTCCAAGGGCAAGAGGAATCTGAATCCCCAATTTGAAGAGGCGGCTGCTGATGCAGATGGGCATGGGTTCAAGATTGCCAAGGTTAATGGAGTTTGA 1638 0.37 MPPPFDMISKMHPPREAWRLKVRVLRLWVVPSFGNHDVPNLMEMILISFMSMLAPISFSFKYGCEKIQATVKKPLLNRFRDHIVEGKVYRMAYFTVVSNHGSYRATSHEFKLVFLHRTTVVAVDEDVIPKTCFNMFSFSELLNMTQDYDFLVDVIGLLTSVRKEKEYAKEEKIVKMIVLELTSKDLTVRCALFGDYVNQVNHFLAXGYVEQPVXVIQLAKVKFFRGQVGLQNVXYATXXLFNXDXXEVVEFRQSMIEQGVNGTQPLFIANEGKIVSLEDDFMHLTRKCTIEELQDNNEEGSFIIFGTIQGIVEDGGWWYSACVCGKGIYPQNGAYYCDFCLKYIINVTPRFKIKITVEDHSGEGIFLFFDREASYLLKKSCADLFTEEPDLHKSVPCGEGDIGIKKESSKTFIKSEKVAGESSGILSKSPVLINFLAGKQPAVSGETEFASLINGEHGKDEKTPSNDTVSDDLSAELDILLSSPEKETQEVLSHIIDAPSQYGEKLIHENHVVTSKGKRNLNPQFEEAAADADGHGFKIAKVNGV* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0583 545 SUPERFAMILY Nucleic acid-binding proteins 287 386 IPR012340 -
Amo20g0583 545 Gene3D - 279 409 IPR012340 -
Amo20g0583 545 CDD RPA1_DBD_C 290 390 IPR013955 -
Amo20g0583 545 Pfam Domain of unknown function DUF223 65 145 IPR003871 -
Amo20g0583 545 Gene3D - 4 125 IPR012340 -
Amo20g0583 545 Pfam Replication factor-A C terminal domain 304 385 IPR013955 -
Amo20g0583 545 Gene3D - 127 264 IPR012340 -
Amo20g0583 545 PANTHER REPLICATION FACTOR A 1, RFA1 22 385 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Amo20g0583 545 CDD RPA1_DBD_B_like 153 256 - -
Amo20g0583 545 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 385 - -
Amo20g0583 545 CDD RPA1_DBD_A_like 19 120 - -
Amo20g0583 545 SUPERFAMILY Nucleic acid-binding proteins 133 255 IPR012340 -
Amo20g0583 545 SUPERFAMILY Nucleic acid-binding proteins 3 125 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0583 Amo-Chr20 7390081 7392904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0583 11 384 Core DNA Replication Machinery Family AT5G08020 22.449 4.10e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0583 - - adu:110280586 839.336