Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0555 TTACACCATTGTTCTTTTGCGCTTTCTTCCAATCTGCCGTCTCTCTCTTTTTCTTCTCTTTCTGACATCCTCTGTTTCAGCTTAGAACAGAGCTTTGAGCTTTCACAGAGACCAACAATGGAGGTACAGGGTAAGCGCTTGAAGCCACGCCTCGATCGCCGCAACGCCATGAAGAACATCACTTACAAAGTCTCCTCTTCTTTCACCCCTTCCTCCATTGACCTTCCTCCTTCTTTGAACCACCAAAAAAGCTTCAGGGTCAAGGGCATCGACGACGGCGAGTTTGACCTCATCTTCCGCACCCTCGGTCTCTCTGGACCCGAAGACTTTTCTATTCCAACCGCAGCTTGGGAAAAAGCCCAAAGGTCTCGCCTTTCTCCTTCCCCTGTCACCACCAAGAACATCATCAACCTCCAGGTTGTTGATGAAGCACATGAACACCAAGCCCCACTTCCAATTCCACCTAAAACTGAATCTGGGGTTGGCTTCAATGTCGATGTTAGGCTGAAAAATCTAAGCTTTCAGCAACTTGATGGTGGGGGCATCAAGGGTGTTAGGCCTCCACCGGTGATGTTGCGGCCACCATTTGATGATGATGACAATGATGTTGATGTTGTGGATTCACCTTCGAGGGAACAAGATGAAAGGTACTTTGAAGAGAGTGGGGACCTTGATGTTTCTGATGATGATGATAGTGATGTTGCTAGTGGTGAGGTTTCCGATGATGTTGTTGGCGAGTCAAATGTTCATAACGTGTCTCCAAATGGTTCTTTTAGGAGAACGTTTATGTCGTGGCAAAAGGGCGAGATTCTTGGTAAAGGCTCATTTGGAACGGTTTATGAAGGCTTTACCGATGATGGATTCTTTTTTGCGGTGAAGGAGGTATCTTTGTTGGATGAAGGAAGCCAGGGCAAACAGAGCATTTTCCAACTTCAACAGGAAATATATCTTCTGAGTCAATTTGAACATGAGAACATAGTTAGATATCTTGGCACAGACAAGGACAATAACATGCTATACATCTTTCTCGAGCTTGTAACAAAAGGATCATTGGCAAGTCTTTATAGAAAGTATCGTTTAAAGGATTCTCAGGTTTCGGCATACACAAGACAGATTCTAAGTGGTTTGAAGTATCTCCATGATCGTAACGTGGTTCACAGGGACATCAAGTGTGCTAATATATTGGTTGATGCAAATGGATCCGTGAAGCTTGCAGATTTTGGGTTGGCAAAGGCAACTAAATTAAACGATGTTAAATCAAGCAAAGGTTCTCCATATTGGATGGCCCCTGAGGTTGTTAACTTACGAAACCGTGGTTATGGACTAGCAGCTGATATATGGAGCTTAGGATGTACAGTTTTGGAGATGTTAACACGGCAACCTCCTTATTCTCATTTAGAAGGAATGCAAGCGCTATTTCGGATTGGAAGGGGTGAAGCACCTCCAGTTCCTGAAACATTATCAAAAGATGCAAGAGATTTCATAATGAAATGCTTACAAGTGAATCCAAGTAAAAGGCCAACTGCTACTCAGCTGTTGGATCATCCATTTGTAAAGAGGCCACTTCTATCTCCCATAAGTCTTGTCTCTCCACGCATTAATCTTCTTCTGTCTTAA 1617 0.4378 LHHCSFALSSNLPSLSFSSLSDILCFSLEQSFELSQRPTMEVQGKRLKPRLDRRNAMKNITYKVSSSFTPSSIDLPPSLNHQKSFRVKGIDDGEFDLIFRTLGLSGPEDFSIPTAAWEKAQRSRLSPSPVTTKNIINLQVVDEAHEHQAPLPIPPKTESGVGFNVDVRLKNLSFQQLDGGGIKGVRPPPVMLRPPFDDDDNDVDVVDSPSREQDERYFEESGDLDVSDDDDSDVASGEVSDDVVGESNVHNVSPNGSFRRTFMSWQKGEILGKGSFGTVYEGFTDDGFFFAVKEVSLLDEGSQGKQSIFQLQQEIYLLSQFEHENIVRYLGTDKDNNMLYIFLELVTKGSLASLYRKYRLKDSQVSAYTRQILSGLKYLHDRNVVHRDIKCANILVDANGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNRGYGLAADIWSLGCTVLEMLTRQPPYSHLEGMQALFRIGRGEAPPVPETLSKDARDFIMKCLQVNPSKRPTATQLLDHPFVKRPLLSPISLVSPRINLLLS* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0555 538 SUPERFAMILY Protein kinase-like (PK-like) 265 527 IPR011009 -
Amo20g0555 538 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 43 136 - -
Amo20g0555 538 ProSiteProfiles Protein kinase domain profile. 265 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0555 538 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 43 136 - -
Amo20g0555 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 384 396 IPR008271 GO:0004672|GO:0006468
Amo20g0555 538 ProSitePatterns Protein kinases ATP-binding region signature. 271 293 IPR017441 GO:0005524
Amo20g0555 538 MobiDBLite consensus disorder prediction 206 220 - -
Amo20g0555 538 SMART serkin_6 265 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Amo20g0555 538 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 179 520 - -
Amo20g0555 538 MobiDBLite consensus disorder prediction 183 250 - -
Amo20g0555 538 Gene3D Transferase(Phosphotransferase) domain 1 263 530 - -
Amo20g0555 538 MobiDBLite consensus disorder prediction 221 237 - -
Amo20g0555 538 PANTHER SERINE/THREONINE/DUAL SPECIFICITY PROTEIN KINASE, CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 179 520 - -
Amo20g0555 538 Pfam Protein kinase domain 266 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0555 Amo-Chr20 6966023 6968734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0555 182 522 MAP Kinase Kinase Kinase AT4G08500 56.417 5.91e-132 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Amo20g0555 Pkinase 2.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0555 - K13414 gmx:100806902 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5249 13 152491129 152494172 Amo20g0555 20 6966023 6968734 PCT