Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0554 ATGAAAACTGATCTCTCTTTGCACATAGATGCCGAGCAAGAACAAGAAAACAAACAAGAGGACGATGTTGATGTTGATGTTGAGGAAGAAATGAAACAAACACAGCTGCAATTAGAAGCTGGAGAAATAGAAGAAGATGTTGTATCTTTGCAAGACAACAAGAACTATAAAACTAGAGAGGAGGAGGACCTGAATGTGTTACAAATGGAGATGGATCGCATCAAAGAGGAGAATAAAGCTCTGAGGAAACTGGTGGAACAAACTATGAAAGACTACTATGATCTCCAAATGAAAATTTCCAACAATTATAATAACAAACACATCAAGGATCTTGAAATTTCTGTCCAAAGGGCATCACCGACAATTCATGATGATGATGATGAACTGAGTTTGTCACTGAGGTTGAATAATACAAGTAGCACATCATGGAGGATTCATCAACAAGGGAGGGTCACAGATAATATTATTAATGAAAAACTAATTTCAAGTTTTGCATCATCATCATCATCAGCATCACTGCAGAACAAGTTAATAATAAGGGGAACAACACATGATGATACTGCTATCACTACTCATCATCATAATCTTTCTGCAGCAGCTTCCACCACTACTCCAAACAGAAAACCTAGGGTTTCTGTTAGAGCCAGATGCGAGGAAGCCAAAATGAATGATGGGTGCCAATGGAGAAAATATGGCCAAAAAATTGCAAAAGGGAATCCATGCCCTCGAGCTTATTATCGTTGCACCGTAGCCCCGGGTTGCCCCGTTAGAAAACAGGTGCAAAGATGCTTGGATGACATGTCAATACTAATCACAACGTATGAAGGGACACATAATCATCCACTGCCGGTGGGTGCAACTGCCATGGCCGCAACAGCTTCTGCACCTGCTTCCTTTGCCCTTTCTCATGGTGTCTCTGCATCACAACCTCACTTTCCATGGATCACCAATAATAATATTAATATTAATAATAATAACGTGTCGGCAATAGCCTCAGATCCTAACAAGTTCAAGGTTGCGGTTGCGGCAGCCATAACAACTCTCTTCACCAATAATAATAATAAAGAAAGCCATCATCATCATCACGGTGGTAATGTAGCCAATTCATCATTATTTGCTACTGCAGGTACCTCTAATAACAACACCAGTAACTGGATCATAGAATCTCTCTCCAGAAACGTTAAGCCCAATTGA 1194 0.4012 MKTDLSLHIDAEQEQENKQEDDVDVDVEEEMKQTQLQLEAGEIEEDVVSLQDNKNYKTREEEDLNVLQMEMDRIKEENKALRKLVEQTMKDYYDLQMKISNNYNNKHIKDLEISVQRASPTIHDDDDELSLSLRLNNTSSTSWRIHQQGRVTDNIINEKLISSFASSSSSASLQNKLIIRGTTHDDTAITTHHHNLSAAASTTTPNRKPRVSVRARCEEAKMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCLDDMSILITTYEGTHNHPLPVGATAMAATASAPASFALSHGVSASQPHFPWITNNNININNNNVSAIASDPNKFKVAVAAAITTLFTNNNNKESHHHHHGGNVANSSLFATAGTSNNNTSNWIIESLSRNVKPN* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0554 397 MobiDBLite consensus disorder prediction 1 24 - -
Amo20g0554 397 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 315 388 - -
Amo20g0554 397 PANTHER WRKY TRANSCRIPTION FACTOR 9-RELATED 4 305 - -
Amo20g0554 397 Gene3D WRKY domain 207 284 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo20g0554 397 SUPERFAMILY WRKY DNA-binding domain 216 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo20g0554 397 MobiDBLite consensus disorder prediction 1 15 - -
Amo20g0554 397 Coils Coil 57 91 - -
Amo20g0554 397 Pfam WRKY DNA -binding domain 223 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g0554 397 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 315 388 IPR044810 GO:0003700
Amo20g0554 397 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 4 305 IPR044810 GO:0003700
Amo20g0554 397 ProSiteProfiles WRKY domain profile. 217 283 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo20g0554 397 SMART WRKY_cls 222 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0554 Amo-Chr20 6950727 6952858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0554 15 312 WRKY Transcription Factor Family AT1G68150 44.625 1.45e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo20g0554 WRKY 1.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0554 - - aip:107621791 691.804