Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0549 ATGGCGTCGACTGATCCGGATCTGCCACGTGACTCATGGGTGTGTTCTCTTGCAGAAGAAGCAGAAGAAGAAGCTTCCAATAACAAGGCCATGGAGGAGTTTCTGAACAACATCTACTCGTCCAACGACACGAAGAGCACTGCTGACAAGGCGAGCCTTCAGAAACAGAGGAGGATGATCAAGAACAGAGAGTCTGCGGCCAGATCCAGGGAACGCAAACAAGCTTACACCCTTGAGCTAGAATGTTTGGCACAAATCAAGAGGCAGAGGTACAACCACCTCCTCCACACCATCATTCCAGTTATCCACAAGCGTAAACCAAGACCAATGCTTCGCAGACTCAATTCCCTCCCCTGCAGAAACAAAATGAATTTGGAGTGCATATCCAGAAAATGCATAAAGCCATCATCACCAACGCCTCCAAACCTTCAAATCTTCAACATGTCTCTTCTGGACCAGCTTTCCCCTAACATCCATGGCAACATCACCTTCTTCTACCCTCACAAAACTTCTGCTCAGGAATTCTCCGCCAAATCCCAACTCCTTCAGGACTCACTCTCTCAAATCTTGACGCTCTTCTATCCTCTCGCCGCCCGCCTCCGAGACGCCGCCACCATCCACTGCAACGACCAAGGAGCCTTCTTCATCCAATCACGAACCCAAACACCTCTCTCTCAGATCCTCTCCCCCCCTAACTTCGATATCATCCAGAATCTTCTCCCTACCACCCACTCCGACTCCTTGCTCCTTGTCCGCTTTACCTTGTTCGGTTGCGGCGCCACCGCCATCACCATCTCCCTTACTCACAAGATCGCTGACTTCGCAGCCTTGATCACTCTCCTCAAGGCATGGACCGCCGCCTGCATTGGCGGAGACACCCAGCCGGTGGTCCCCGAACTCGCCATCGGATCTGCTCTCTTCCCTCCGAGAGAGATTCTTCCCGCCGGGATATCAGGCTCCGTGAACATCGCGGCGGAGAAGTTCACGACGAGGAGGCTGATTTTCGAGTCTTCGAAGGTAGAAGAGCTGAAGAAGAGGGTGAAAAGCGAGCTTCAGTTTGAGGCGTCGAGGGTTGAGGTGGTGCTTGGTCTCATTTGGAGATGCGCATTGTTAACTACTTCAAAACGTAAAACGCCTTCAACCTTGTTCCAGGCAGTGAACCTGCGACGACGAATGGAACCTCCGATTCCAGAGACGGCGTTGGGGAACTTGGTGTGGGCGTTTGCAGTGACTGTGGAGGAGGAGTGTGAGGTAGAGTTGCAGGTGGTAGTAAAGAAGATGAGGGATTCTTTGAAGGAATTCATGGAGAGGAAAGGCGAAAGGTTGAATAATTCAGAAGGTAGGTGTGAGGTGGTGATGGAGGATTTGAAGGAGAGGGGTGAGATGTTGAAGAAGAGTGGTAATGTGGTGTATAAGTGTTCGAGTTGGTGCAAAGTTGGATCATCACTGTATGAGGTTGATTTTGGGTGGGGGAAGCCGCTTTGGATGTGCAGCGTGAACAACATAGTGAGTAACACCGTTGCTTTGATGGATACAAGGGATGGGCATGGCGTCGAAGCTTTTGTCACCTTGGATCATCAACACATGGATTCCTTTCAACAATCTCAGGAACTCCTTCACTATGCTTTGCTTAATCCCCCTCTTCTGTAA 1650 0.5067 MASTDPDLPRDSWVCSLAEEAEEEASNNKAMEEFLNNIYSSNDTKSTADKASLQKQRRMIKNRESAARSRERKQAYTLELECLAQIKRQRYNHLLHTIIPVIHKRKPRPMLRRLNSLPCRNKMNLECISRKCIKPSSPTPPNLQIFNMSLLDQLSPNIHGNITFFYPHKTSAQEFSAKSQLLQDSLSQILTLFYPLAARLRDAATIHCNDQGAFFIQSRTQTPLSQILSPPNFDIIQNLLPTTHSDSLLLVRFTLFGCGATAITISLTHKIADFAALITLLKAWTAACIGGDTQPVVPELAIGSALFPPREILPAGISGSVNIAAEKFTTRRLIFESSKVEELKKRVKSELQFEASRVEVVLGLIWRCALLTTSKRKTPSTLFQAVNLRRRMEPPIPETALGNLVWAFAVTVEEECEVELQVVVKKMRDSLKEFMERKGERLNNSEGRCEVVMEDLKERGEMLKKSGNVVYKCSSWCKVGSSLYEVDFGWGKPLWMCSVNNIVSNTVALMDTRDGHGVEAFVTLDHQHMDSFQQSQELLHYALLNPPLL* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0549 549 Gene3D - 54 98 - -
Amo20g0549 549 Gene3D - 325 541 IPR023213 -
Amo20g0549 549 Gene3D - 122 315 IPR023213 -
Amo20g0549 549 CDD bZIP_plant_BZIP46 54 81 - -
Amo20g0549 549 Pfam Transferase family 124 538 - -
Amo20g0549 549 PANTHER F21J9.9 122 547 - -
Amo20g0549 549 Pfam bZIP transcription factor 51 82 IPR004827 GO:0003700|GO:0006355
Amo20g0549 549 PANTHER VINORINE SYNTHASE-RELATED 122 547 - -
Amo20g0549 549 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 57 72 IPR004827 GO:0003700|GO:0006355
Amo20g0549 549 SUPERFAMILY Leucine zipper domain 55 98 IPR046347 GO:0003700|GO:0006355
Amo20g0549 549 SMART brlzneu 50 117 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0549 Amo-Chr20 6888806 6890931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0549 123 534 Monolignol Biosynthesis Gene Families AT5G48930 25.000 1.37e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Amo20g0549 Transferase 2.7e-76 CL0149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0549 - - aip:107620102 755.747