Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0543 ATGAAGGGTATGGCGAACGTATTGAGCGGGTTGAAACCCGTGATTCTAATGGTGTTGGTGCAGGTTGCATTCACTGCTGTCAATGTCTTCTACAAGCTTGCCATCAATGATGGGATGAGTGTTAAAGTTCTCACTGCTTATCGTCTCGCTTTTGGTGCTGCTTTCACTGTTCCACTTGCTCTTGTTTCTGAAAGGAACAAGAGACCAAAGATGACTTGGAGGGTGCTTTTCATGTCATTTCTTTGCGGCTTCTTTGGGGCAAGTTTGTTTCAGAACCTTTTCTATGAGGCACTGGCTTTGACGTCAGCAACGTTTGTGTCTGCCATCTACAACCTCATACCAGGCATCACTTTTGTGTTGGCCATAACCTTCGGTTTTGAGAAACTGAAACTGAGGGGAGCAGCTGGAAAGGCCAAGGTGTTTGGAACCCTGATTGGAATTGGTGGGGCAATGGTGTTGACTTTTGTCAAAGGGGTTCAAATTAATATATGGCCTTTCCATGTCAACCTTTTGAAGAACCCATCACATCATCATAATACGCATACAAGTAGTAACGACTTGTTGGGGGTTGTGTGCGCCATTGCTAGCTGCTTCTCTTATGCTTCTTGGCTCATCATTCAGGCTAAGATGACCAAGGAATACCCAAGTCATAACTCAAGCACAGCTTTGATGCTTACAGCAGCAGCTATTCAAGCCACTGTTTTTGCTTTTTGCACTGAGAGGGATCTCCATCAATGGAAGCTTGGTTGGAATATCAGGCTTTTGGCTTCTGCTTATTCGGGAATTGTGGGGTCTGGAGTAGTGTTTCTCATCATAGCATGGTGCATACAAATGAGAGGGCCATTATTTGCCTCCATTTTCAACCCTCTCATGCTTGTGCTTGTGGCTGTTGCGGCTTCTTTCATGTTGGATGAGCAATTGTATCTTGGAAGTGTGATTGGAGCAGTGGTGATAGTGTGTGGACTATACATGGTTCTATGGGGAAAGAACAAAGAGATGAAAAAGGTAACTCAGTTGCTGCCATCTGAAATCATGCAATTACAGCAGCAGCAGGATCAACAACAGACTATACAAGTTGTTGTTACGTCCACGCCAGTTGTCAAATGTGAGCAACAACAATAA 1122 0.4439 MKGMANVLSGLKPVILMVLVQVAFTAVNVFYKLAINDGMSVKVLTAYRLAFGAAFTVPLALVSERNKRPKMTWRVLFMSFLCGFFGASLFQNLFYEALALTSATFVSAIYNLIPGITFVLAITFGFEKLKLRGAAGKAKVFGTLIGIGGAMVLTFVKGVQINIWPFHVNLLKNPSHHHNTHTSSNDLLGVVCAIASCFSYASWLIIQAKMTKEYPSHNSSTALMLTAAAIQATVFAFCTERDLHQWKLGWNIRLLASAYSGIVGSGVVFLIIAWCIQMRGPLFASIFNPLMLVLVAVAASFMLDEQLYLGSVIGAVVIVCGLYMVLWGKNKEMKKVTQLLPSEIMQLQQQQDQQQTIQVVVTSTPVVKCEQQQ* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0543 373 PANTHER WAT1-RELATED PROTEIN 12 352 IPR030184 GO:0016021|GO:0022857
Amo20g0543 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 244 331 - -
Amo20g0543 373 PANTHER WAT1-RELATED PROTEIN 12 352 - -
Amo20g0543 373 Pfam EamA-like transporter family 188 326 IPR000620 GO:0016020|GO:0016021
Amo20g0543 373 Pfam EamA-like transporter family 12 154 IPR000620 GO:0016020|GO:0016021
Amo20g0543 373 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0543 Amo-Chr20 6835132 6836895 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0543 11 337 Nodulin-like Gene Family AT1G25270 43.731 1.33e-95 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0543 - - gmx:100798755 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo20g0543 20 6835132 6836895 Amo13g5231 13 152281384 152289185 PCT