Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo20g0542 ATGAAGAACATGTGGAAGGTGGTGGAAGTGGTGAAGCCGGTGGTGTTGATGGTGATTGTGCAGATAGCAAATGCATGGGTCAATGTTCTCTACAAGCTTGCTGTCAACGATGGCATGAGCCTCAGAGTAGTTGTTGCCTACCGCTATATCTTTGCTACTGCTTTCATTGCTCCTCTTGCTTATATTCTCGAGAGGAAGACAAGGACAAAGATGACTTGGACCATTCTCTTTCAGTCATTCTTGTGCGGTTTATTTGGGGGAGCATTGCCTCAAAACTTACAAATGGAAGCACTTGCTTTAACTTCTGTAACATTTGCAACCGCCATATCCAATCTGATTCCAGCCATCACCTTCATCTTGTCTCTTTCCTTCGGAATGGAGAGATTGAGTTTGAAAAAAGCAGCAGGAAAGGCGAAAATAATAGGAACAATGAATGGAATTGGTGGGGCAATGCTGATGACATTCTATAGAGGCGTAGAAGTTAAGATGCTATCCTTTCACATTAACCTCTTTAATCAACGAAATGGCAGCGGCGCCGTACACTCGTCACGTGGTGGTGGAGGGTTGTTTTTGCTGGGTGCTGTGTCGTCGTTCTCCAGCAATGCGTCTTATGCGTTGTGGCTAATTATTCAGGCGAAGATGAGTAGAGCATATCCATATCCATATTCAAGCACTGCACTCATGTGTGTAATGGGAGCAATTCTTTCTGTCACCTTCACATTTTGTGTTGAGAGGGATTTGACTCAGTGGAAGTTGGGTTGGAATGTCAGACTACTCACTGTAGCTTACGCGGGTACAGTGGTTTCGGGAGTAATGGTGGCTGTGATATCGTGGTGCGTACGCATGAGAGGTCCCTTGTTTGTCTCTGTTTTTAGTCCTCTCATGCTAGTGGTTGTTGCCTTTGCTGGATCCACCATTCTTGATGAAAAGCTATACCTTGGAAGCATAATTGGATCGTTGTTGATTGTGTGCGGCTTATACCTAGTTCTATGGGGTAAAAGCAAAGAGATGACGAAAAATCAATTAGTGTCATCAAAAAGCGACAAACTTGAAATAGTGGTCAAGCCTCAAGTAGTACATGGCGTCCATAAGGATGATCAAGATCAAGATTCATTCAAAAAAGGAGGAGAACAACATTAA 1140 0.4368 MKNMWKVVEVVKPVVLMVIVQIANAWVNVLYKLAVNDGMSLRVVVAYRYIFATAFIAPLAYILERKTRTKMTWTILFQSFLCGLFGGALPQNLQMEALALTSVTFATAISNLIPAITFILSLSFGMERLSLKKAAGKAKIIGTMNGIGGAMLMTFYRGVEVKMLSFHINLFNQRNGSGAVHSSRGGGGLFLLGAVSSFSSNASYALWLIIQAKMSRAYPYPYSSTALMCVMGAILSVTFTFCVERDLTQWKLGWNVRLLTVAYAGTVVSGVMVAVISWCVRMRGPLFVSVFSPLMLVVVAFAGSTILDEKLYLGSIIGSLLIVCGLYLVLWGKSKEMTKNQLVSSKSDKLEIVVKPQVVHGVHKDDQDQDSFKKGGEQH* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo20g0542 379 PANTHER WAT1-RELATED PROTEIN 12 350 IPR030184 GO:0016021|GO:0022857
Amo20g0542 379 PANTHER WAT1-RELATED PROTEIN 12 350 - -
Amo20g0542 379 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 141 - -
Amo20g0542 379 Pfam EamA-like transporter family 193 330 IPR000620 GO:0016020|GO:0016021
Amo20g0542 379 Pfam EamA-like transporter family 13 136 IPR000620 GO:0016020|GO:0016021
Amo20g0542 379 SUPERFAMILY Multidrug resistance efflux transporter EmrE 229 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo20g0542 Amo-Chr20 6819031 6826474 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo20g0542 3 349 Nodulin-like Gene Family AT1G68170 44.957 1.03e-99 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo20g0542 - - adu:107486536 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g5231 13 152281384 152289185 Amo20g0542 20 6819031 6826474 PCT